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IGVFFI3859IJXZ

released
validated
File Set
IGVFDS4769QTGM(single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq))
Summary
unfiltered cell by gene in comprehensive gene count matrix
Analysis Step Version
/analysis-step-versions/9c457b9f-fc6d-4cf1-b249-218827e9b449/
File Format
tar
Content Type
comprehensive gene count matrix
Content Summary
cell by gene in comprehensive gene count matrix
Aliases
buenrostro-bernstein:IGVFDS4769QTGM_rna_kb_output_folder_tar_gz
md5sum
892e475cb77d95472d1485f1c8646a1d
Content MD5sum
08e660822ac854a818f7c15cb768d42c
File Size
5.2 GB
Submitted File Name
gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/a6d4a8e2-651e-421f-ae34-bfdf4cf1f42e/single_cell_pipeline/e5388b35-8930-49ab-a59f-e57e72b28278/call-rna/wf_rna/ee10e6d6-0bbd-468a-8de3-f27d3232336b/call-kb/SS-PKR-132.tar.gz
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

2 items
Page
Preview
Specification of matrix tar generated by https://github.com/IGVF/single-cell-pipeline
file format specification
Specification of each mtx and txt file in matrix tar file from single cell RNA uniform pipeline
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 132)

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tar
transcriptome index
GRCm39 GENCODE M36 transcriptome index
External Lab, Community
1.7 GB
validated

Files This File Derives From

18 items
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
fastq
reads
Jason Buenrostro, Broad
1.4 GB
validated
fastq
reads
Jason Buenrostro, Broad
2.6 GB
validated
fastq
reads
Jason Buenrostro, Broad
1.4 GB
validated
fastq
reads
Jason Buenrostro, Broad
1.7 GB
validated