IGVFFI3744BJKW

released
validated
{
    "@context": "/terms/",
    "@id": "/matrix-files/IGVFFI3744BJKW/",
    "@type": [
        "MatrixFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI3744BJKW",
    "analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
    "assay_titles": [
        "Parse SPLiT-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012077/",
        "component": "mapping"
    },
    "checkfiles_version": "v20",
    "content_md5sum": "2e10530b9bb5136aa01dcfd4cc22d650",
    "content_summary": "cell by gene in sparse gene count matrix",
    "content_type": "sparse gene count matrix",
    "creation_timestamp": "2025-04-06T22:48:35.423466+00:00",
    "derived_from": [
        "/sequence-files/IGVFFI2937IZRK/",
        "/sequence-files/IGVFFI3588ILMF/",
        "/sequence-files/IGVFFI4707HAOA/",
        "/sequence-files/IGVFFI3989HKUV/",
        "/sequence-files/IGVFFI7938FIXS/",
        "/sequence-files/IGVFFI6484DSRB/",
        "/sequence-files/IGVFFI5085EFAQ/",
        "/sequence-files/IGVFFI8802TRAR/"
    ],
    "file_format": "tar",
    "file_format_specifications": [
        "/documents/2cee36ca-8fc9-4918-8138-4f98384ee19a/"
    ],
    "file_set": {
        "@id": "/analysis-sets/IGVFDS5094PEWQ/",
        "@type": [
            "AnalysisSet",
            "FileSet",
            "Item"
        ],
        "accession": "IGVFDS5094PEWQ",
        "file_set_type": "intermediate analysis",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM9690EHGL/",
                "@type": [
                    "MultiplexedSample",
                    "Sample",
                    "Item"
                ],
                "accession": "IGVFSM9690EHGL",
                "classifications": [
                    "tissue",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/UBERON_0000473/",
                        "status": "released",
                        "term_name": "testis"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0000992/",
                        "status": "released",
                        "term_name": "ovary"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0000993/",
                        "status": "released",
                        "term_name": "oviduct"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0001301/",
                        "status": "released",
                        "term_name": "epididymis"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0002369/",
                        "status": "released",
                        "term_name": "adrenal gland"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: Mus musculus AJ (male, 69 days) epididymis tissue; Mus musculus PWK/PhJ (female, 69 days) oviduct tissue; ... and 190 more samples",
                "taxa": "Mus musculus",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "Parse SPLiT-seq: sparse gene count matrix"
    },
    "file_size": 1399494599,
    "gene_list_for": [],
    "href": "/matrix-files/IGVFFI3744BJKW/@@download/IGVFFI3744BJKW.tar.gz",
    "input_file_for": [
        "/matrix-files/IGVFFI5074IKKL/",
        "/matrix-files/IGVFFI0091ZNMZ/",
        "/matrix-files/IGVFFI1152NRZL/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ali-mortazavi/",
        "title": "Ali Mortazavi, UCI"
    },
    "loci_list_for": [],
    "md5sum": "f964c659f4512fc200818e8239a92315",
    "principal_dimension": "cell",
    "quality_metrics": [
        "/single-cell-rna-seq-quality-metrics/2bc8fbf7-52de-4d65-82e4-2acd670cb8e2/"
    ],
    "reference_files": [
        "/reference-files/IGVFFI9282QLXO/",
        "/reference-files/IGVFFI9744VSJF/"
    ],
    "release_timestamp": "2025-04-19T03:35:38.365396+00:00",
    "s3_uri": "s3://igvf-files/2025/04/06/a965433c-7186-4023-8c20-76fc399d109e/IGVFFI3744BJKW.tar.gz",
    "schema_version": "7",
    "secondary_dimensions": [
        "gene"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
        "title": "Diane Trout"
    },
    "submitted_file_name": "igvf_008/igvf_008_Subpool_5_total+core.tar.gz",
    "summary": "cell by gene in sparse gene count matrix",
    "upload_status": "validated",
    "uuid": "a965433c-7186-4023-8c20-76fc399d109e",
    "workflow": {
        "@id": "/workflows/IGVFWF6241JYDF/",
        "name": "UCI snRNA-seq workflow"
    }
}