Home

IGVFFI3686NNKA

released
validated
File Set
IGVFDS2762DTQI(Parse SPLiT-seq: sparse gene count matrix)
Summary
cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/
File Format
tar
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
Aliases
ali-mortazavi:IGVF_B01_Subpool_5_total+core
md5sum
d39ecb63091cd45760b16a5564559993
Content MD5sum
51ac3e4afacaf35e042f70003f10dbb9
File Size
407 MB
Submitted File Name
IGVF_B01_Subpool_5_total+core.tar.gz

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples

Reference Files

2 items
fasta
genome reference
GRCm39 genome reference
External Lab, Community
871 MB
validated
gtf
transcriptome reference
GRCm39 GENCODE M32 transcriptome reference
External Lab, Community
29 MB
validated

Files This File Derives From

4 items
fastq
reads
Ali Mortazavi, UCI
6.3 GB
validated
fastq
reads
Ali Mortazavi, UCI
11 GB
validated
fastq
reads
Ali Mortazavi, UCI
6.4 GB
validated
fastq
reads
Ali Mortazavi, UCI
12 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
1.1 GB
validated

Attribution

Award
HG012077
Principal Investigator(s)
Contact P.I.
Ali Mortazavi
Lab
Ali Mortazavi, UCI