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INDEXED
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MatrixFile
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IGVFFI3659KHPI
IGVFFI3659KHPI
released
validated
Json view
File Set
IGVFDS2723TEYB
(HiCAR: contact matrix)
Summary
genomic position by genomic position in contact matrix
Analysis Step Version
/analysis-step-versions/32996b0a-9d1f-4cfe-9e75-1f62f1f93d60/
File Format
mcool
Content Type
contact matrix
Content Summary
genomic position by genomic position in contact matrix
Aliases
charles-gersbach:matrix-file-crispra-control-mouse-hl1-targeted-hicar-rep3-mcool
md5sum
fe34676a880cfe2f8c35bb2057834df3
File Size
57 MB
Submitted File Name
/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/cooler/mouse/HL1_TA432_NT_3_ctrl.1000.mcool
Matrix Details
Principal Dimension
genomic position
Secondary Dimensions
genomic position
File Format Specifications
1 item
Page
Description
Type
Download
Preview
Contact matrix mcool files
file format specification
Cooler___supplementary_data.pdf
Download Cooler___supplementary_data.pdf
Download Cooler___supplementary_data.pdf
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM7656WGBF
InVitroSystem
HL-1
HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library
Reference Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI6815WBWB
fasta
genome reference
GRCh38 genome reference
External Lab, Community
984 MB
validated
Files This File Derives From
2 items
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
IGVFFI1763VPAA
IGVFDS0621CXBC
fastq
reads
Charles Gersbach, Duke
1.3 GB
validated
IGVFFI4132SMVM
IGVFDS0621CXBC
fastq
reads
Charles Gersbach, Duke
1.4 GB
validated
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI8148OTHG
cool
contact matrix
genomic position by genomic position in contact matrix
Charles Gersbach, Duke
13 MB
validated
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke