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IGVFFI3586OAIM

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS8424XWBB(single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome))
Summary
cell by gene expression by peak in filtered feature barcode matrix
Analysis Step Version
/analysis-step-versions/5fd37002-4334-4c11-a364-93ef7a700eb5/
File Format
hdf5
Content Type
filtered feature barcode matrix
Content Summary
cell by gene expression by peak in filtered feature barcode matrix
Aliases
harinder-singh:Bcells_don1_pitt_multiome_filtered_feature_bc_mtx
md5sum
d0ebea77d055b25e411522d47c25c75b
File Size
514 MB
Submitted File Name
/ix/djishnu/Common_Folder/Jingyu_Data/multiome_1st_donor_UPMC_aggr/outs/filtered_feature_bc_matrix.h5
Checkfiles Version
v20
Attribution
Harinder Singh, University of Pittsburgh

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene expression, peak

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Format specification for filtered_feature_bc_matrix.h5 files derived from cellranger aggr
file format specification

Samples

3 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days
InVitroSystem
Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days
InVitroSystem
Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 2 days

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
gtf
transcriptome reference
GRCh38 GENCODE 32 transcriptome reference
Ansuman Satpathy, Stanford
55 MB
validated

Files This File Derives From

9 items
hdf5
raw feature barcode matrix
Harinder Singh, University of Pittsburgh
393 MB
validated
hdf5
raw feature barcode matrix
Harinder Singh, University of Pittsburgh
405 MB
validated
hdf5
raw feature barcode matrix
Harinder Singh, University of Pittsburgh
447 MB
validated
tsv
fragments
Harinder Singh, University of Pittsburgh
1.8 GB
validated
tsv
fragments
Harinder Singh, University of Pittsburgh
1.9 GB
validated
tsv
fragments
Harinder Singh, University of Pittsburgh
1.8 GB
validated
csv
barcode to element mapping
Harinder Singh, University of Pittsburgh
17 MB
validated
csv
barcode to element mapping
Harinder Singh, University of Pittsburgh
17 MB
validated
csv
barcode to element mapping
Harinder Singh, University of Pittsburgh
17 MB
validated

Files Derived From This File

2 items
h5ad
sparse peak count matrix
cell by peak in sparse peak count matrix
Harinder Singh, University of Pittsburgh
5.4 GB
validated
h5ad
sparse gene count matrix
cell by gene expression in sparse gene count matrix
Harinder Singh, University of Pittsburgh
1.9 GB
validated