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IGVFFI3575TVLQ

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS9192YMGI(CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
cell by gene expression in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/4cfc022a-ff63-4d13-99f7-257a6bfe4bd7/
File Format
h5ad
Content Type
sparse gene count matrix
Content Summary
cell by gene expression in sparse gene count matrix
Aliases
gary-hon:CM_Pilot_2_PB_RNA_h5ad
md5sum
1e76fdd817cc3519ad3cfdcf6594e7e2
File Size
19 GB
Submitted File Name
/project/shared/gcrb_igvf/data/shared/CMPILOT2_scRNAseq/H5AD/V0_CM_Pilot#02_reprocessed_sgRNACells_filtered_no_embedding_filtered_full.h5ad
Checkfiles Version
Legacy version of checkfiles
Attribution
Gary Hon, UT

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene expression

Samples

8 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW267) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW265) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW262) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW266) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW261) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW264) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW268) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW263) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
gtf
transcriptome reference
GRCh38 GENCODE 32 transcriptome reference
External Lab, Community
55 MB
validated

Files This File Derives From

2 items
hdf5
filtered feature barcode matrix
Gary Hon, UT
783 MB
validated
pkl
raw feature barcode matrix
Gary Hon, UT
4.5 GB
validated