Home

IGVFFI3541FUQE

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS3401CMEA(single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome))
Summary
cell by peak in sparse peak count matrix
Analysis Step Version
/analysis-step-versions/7f2aa3a7-cffa-4b86-b41c-ace909237d28/
File Format
h5ad
Content Type
sparse peak count matrix
Content Summary
cell by peak in sparse peak count matrix
Aliases
harinder-singh:Bcells_don1_pitt_multiome_atac_mira_mtx
md5sum
4d7446c45c362d093f152edc251d2391
File Size
5.4 GB
Submitted File Name
/ix/djishnu/peasena/primary_multiome/donor1_upmc/h5_files/donor1_multiome_atac_post_mira.h5ad
Checkfiles Version
v20
Attribution
Harinder Singh, University of Pittsburgh

Matrix Details

Principal Dimension
cell
Secondary Dimensions
peak

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Format specification for ATAC h5ad files derived from MIRA joint topic modeling
file format specification

Samples

3 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days
InVitroSystem
Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days
InVitroSystem
Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 2 days

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
hdf5
filtered feature barcode matrix
Harinder Singh, University of Pittsburgh
514 MB
validated