{
"@context": "/terms/",
"@id": "/matrix-files/IGVFFI3400WWCB/",
"@type": [
"MatrixFile",
"File",
"Item"
],
"accession": "IGVFFI3400WWCB",
"analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
"assay_titles": [
"Parse SPLiT-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping"
},
"checkfiles_version": "v20",
"content_md5sum": "d355eb49444fe4a358840a5b29af618d",
"content_summary": "cell by gene in sparse gene count matrix",
"content_type": "sparse gene count matrix",
"creation_timestamp": "2025-04-06T23:08:14.239770+00:00",
"derived_from": [
"/sequence-files/IGVFFI8012MRTA/",
"/sequence-files/IGVFFI1315HRLW/",
"/sequence-files/IGVFFI8631ASMY/",
"/sequence-files/IGVFFI3374XZVT/",
"/sequence-files/IGVFFI3305TOOF/",
"/sequence-files/IGVFFI6445XAMM/",
"/sequence-files/IGVFFI7619YQYV/",
"/sequence-files/IGVFFI5029YVFX/",
"/sequence-files/IGVFFI0811JMNQ/",
"/sequence-files/IGVFFI8435SVWO/",
"/sequence-files/IGVFFI2636GPIA/",
"/sequence-files/IGVFFI4590ZVRN/",
"/sequence-files/IGVFFI1853IMFF/",
"/sequence-files/IGVFFI2841SXSU/",
"/sequence-files/IGVFFI7568EGQB/",
"/sequence-files/IGVFFI7361VIDC/"
],
"file_format": "tar",
"file_format_specifications": [
"/documents/2cee36ca-8fc9-4918-8138-4f98384ee19a/"
],
"file_set": {
"@id": "/analysis-sets/IGVFDS9383DOXG/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "IGVFDS9383DOXG",
"file_set_type": "intermediate analysis",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM8896JAGW/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM8896JAGW",
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"status": "released",
"term_name": "left cerebral cortex"
},
{
"@id": "/sample-terms/NTR_0000647/",
"status": "released",
"term_name": "right cerebral cortex"
},
{
"@id": "/sample-terms/NTR_0000750/",
"status": "released",
"term_name": "left hippocampal formation"
},
{
"@id": "/sample-terms/NTR_0000751/",
"status": "released",
"term_name": "right hippocampal formation"
},
{
"@id": "/sample-terms/UBERON_0001388/",
"status": "released",
"term_name": "gastrocnemius"
}
],
"status": "released",
"summary": "multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; ... and 190 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
"file_size": 1275328920,
"gene_list_for": [],
"href": "/matrix-files/IGVFFI3400WWCB/@@download/IGVFFI3400WWCB.tar.gz",
"input_file_for": [
"/matrix-files/IGVFFI0996MCPQ/",
"/matrix-files/IGVFFI1830EGOB/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"loci_list_for": [],
"md5sum": "1df9fc1cb72ac487381e6fc37f479ca2",
"principal_dimension": "cell",
"quality_metrics": [
"/single-cell-rna-seq-quality-metrics/57e56a68-649d-407f-a319-10053c3df32a/"
],
"reference_files": [
"/reference-files/IGVFFI9282QLXO/",
"/reference-files/IGVFFI9744VSJF/"
],
"release_timestamp": "2025-04-19T04:31:48.162607+00:00",
"s3_uri": "s3://igvf-files/2025/04/06/bf193d32-c304-41a8-bdee-51677ef48581/IGVFFI3400WWCB.tar.gz",
"schema_version": "7",
"secondary_dimensions": [
"gene"
],
"status": "released",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_file_name": "igvf_011/igvf_011_Subpool_8_total+core.tar.gz",
"summary": "cell by gene in sparse gene count matrix",
"upload_status": "validated",
"uuid": "bf193d32-c304-41a8-bdee-51677ef48581",
"workflow": {
"@id": "/workflows/IGVFWF6241JYDF/",
"name": "UCI snRNA-seq workflow"
}
}