IGVFFI3202KBBO

1{
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10    "aliases": [
11        "ansuman-satpathy:igvf16_raw_rna_counts_10x4"
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13    "analysis_step_version": "/analysis-step-versions/072beaf9-db5c-4bb3-9d63-e5cf7ee29dd6/",
14    "assay_titles": [
15        "10x multiome with MULTI-seq"
16    ],
17    "audit": {
18        "INTERNAL_ACTION": [
19            {
20                "category": "mismatched status",
21                "detail": "Released matrix file [IGVFFI3202KBBO](/matrix-files/IGVFFI3202KBBO/) has in progress subobject reference file [IGVFFI3944QOJF](/reference-files/IGVFFI3944QOJF/).",
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25                "path": "/matrix-files/IGVFFI3202KBBO/"
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27            {
28                "category": "mismatched status",
29                "detail": "Released matrix file [IGVFFI3202KBBO](/matrix-files/IGVFFI3202KBBO/) has in progress subobject reference file [IGVFFI8311QXYM](/reference-files/IGVFFI8311QXYM/).",
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31                "level_name": "INTERNAL_ACTION",
32                "name": "audit_item_status",
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35        ]
36    },
37    "award": {
38        "@id": "/awards/HG011972/",
39        "component": "functional characterization"
40    },
41    "checkfiles_version": "v14",
42    "content_summary": "cell by gene in raw feature barcode matrix",
43    "content_type": "raw feature barcode matrix",
44    "creation_timestamp": "2025-02-14T23:13:25.807799+00:00",
45    "derived_from": [
46        "/sequence-files/IGVFFI8983TGLX/",
47        "/sequence-files/IGVFFI4992DGVZ/",
48        "/sequence-files/IGVFFI5118KMPK/",
49        "/sequence-files/IGVFFI5288RAVF/",
50        "/sequence-files/IGVFFI3615FZMT/",
51        "/sequence-files/IGVFFI4874MGIY/",
52        "/sequence-files/IGVFFI5927GICM/",
53        "/sequence-files/IGVFFI0208EPTI/",
54        "/sequence-files/IGVFFI3368PBQO/",
55        "/sequence-files/IGVFFI8823ARFB/",
56        "/sequence-files/IGVFFI6213KKUL/",
57        "/sequence-files/IGVFFI4176BBVF/",
58        "/sequence-files/IGVFFI0290GYHZ/",
59        "/sequence-files/IGVFFI6088UVTH/",
60        "/sequence-files/IGVFFI8411QKTW/",
61        "/sequence-files/IGVFFI5943RDQM/"
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82                    "Item"
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84                "accession": "IGVFSM5245KVZO",
85                "classifications": [
86                    "differentiated cell specimen",
87                    "multiplexed sample"
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89                "disease_terms": [],
90                "modifications": [],
91                "sample_terms": [
92                    {
93                        "@id": "/sample-terms/EFO_0004905/",
94                        "status": "released",
95                        "term_name": "induced pluripotent stem cell"
96                    }
97                ],
98                "status": "released",
99                "summary": "multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples",
100                "taxa": "Homo sapiens",
101                "treatments": []
102            }
103        ],
104        "status": "released",
105        "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
106    },
107    "file_size": 224066542,
108    "gene_list_for": [],
109    "href": "/matrix-files/IGVFFI3202KBBO/@@download/IGVFFI3202KBBO.h5",
110    "input_file_for": [],
111    "integrated_in": [],
112    "lab": {
113        "@id": "/labs/ansuman-satpathy/",
114        "title": "Ansuman Satpathy, Stanford"
115    },
116    "loci_list_for": [],
117    "md5sum": "14dea49d2df329e383fe0951d85bc680",
118    "principal_dimension": "cell",
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120    "reference_files": [
121        "/reference-files/IGVFFI8311QXYM/",
122        "/reference-files/IGVFFI3944QOJF/"
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124    "release_timestamp": "2025-03-22T00:44:34.552586+00:00",
125    "s3_uri": "s3://igvf-files/2025/02/14/d944343d-2c3b-41ac-836d-dfd0c9d2377d/IGVFFI3202KBBO.h5",
126    "schema_version": "7",
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130    "status": "released",
131    "submitted_by": {
132        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
133        "title": "Christopher Mcginnis"
134    },
135    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf16/e16l4_raw_feature_bc_matrix.h5",
136    "summary": "cell by gene in raw feature barcode matrix",
137    "upload_status": "validated",
138    "uuid": "d944343d-2c3b-41ac-836d-dfd0c9d2377d",
139    "workflow": {
140        "@id": "/workflows/IGVFWF1453HVEC/",
141        "name": "Satpathy Cell Ranger",
142        "uniform_pipeline": false
143    }
144}