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IGVFFI3162UQBM

released
validated
File Set
IGVFDS0561MJAA(CRISPR HiCAR integrating a non-targeting guide (sgRNA) library)
Summary
genomic position by genomic position in contact matrix
Analysis Step Version
/analysis-step-versions/32996b0a-9d1f-4cfe-9e75-1f62f1f93d60/
File Format
cool
Content Type
contact matrix
Content Summary
genomic position by genomic position in contact matrix
Aliases
charles-gersbach:matrix-file-crispra-control-1umET1-ipsc-cm-targeted-hicar-rep2-cool
md5sum
017419d71f0eb00c07f109c9a2c93bb4
File Size
9.6 MB
Submitted File Name
/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/cooler/human/VP64_NT_3_stim.1000.cool
Checkfiles Version
Legacy version of checkfiles
Attribution
Charles Gersbach, Duke

Matrix Details

Principal Dimension
genomic position
Secondary Dimensions
genomic position

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Contact matrix cool files
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days treated with 1 μM Endothelin-1 for 3 days, transduced (lentivirus) with a guide library

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
fasta
genome reference
GRCh38 genome reference
External Lab, Community
984 MB
validated

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
mcool
contact matrix
Charles Gersbach, Duke
43 MB
validated

Files Derived From This File

2 items
tsv
bin paired count
GRCh38 bin paired count
Charles Gersbach, Duke
1.7 KB
validated
tsv
bin paired count
GRCh38 bin paired count
Charles Gersbach, Duke
2.0 KB
validated