IGVFFI3143UHIU

{
    "@context": "/terms/",
    "@id": "/matrix-files/IGVFFI3143UHIU/",
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        "File",
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    ],
    "accession": "IGVFFI3143UHIU",
    "aliases": [
        "ansuman-satpathy:igvf0_raw_rna_counts_10x1"
    ],
    "analysis_step_version": "/analysis-step-versions/072beaf9-db5c-4bb3-9d63-e5cf7ee29dd6/",
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released matrix file [IGVFFI3143UHIU](/matrix-files/IGVFFI3143UHIU/) has in progress subobject reference file [IGVFFI8311QXYM](/reference-files/IGVFFI8311QXYM/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/matrix-files/IGVFFI3143UHIU/"
            },
            {
                "category": "mismatched status",
                "detail": "Released matrix file [IGVFFI3143UHIU](/matrix-files/IGVFFI3143UHIU/) has in progress subobject reference file [IGVFFI3944QOJF](/reference-files/IGVFFI3944QOJF/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
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                "path": "/matrix-files/IGVFFI3143UHIU/"
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        ]
    },
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization"
    },
    "checkfiles_version": "v14",
    "content_summary": "cell by gene in raw feature barcode matrix",
    "content_type": "raw feature barcode matrix",
    "creation_timestamp": "2025-02-14T23:18:31.500791+00:00",
    "derived_from": [
        "/sequence-files/IGVFFI4517STPG/",
        "/sequence-files/IGVFFI8677MRVW/",
        "/sequence-files/IGVFFI5758URSR/",
        "/sequence-files/IGVFFI1215RCAP/"
    ],
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    "file_format_specifications": [
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    "file_set": {
        "@id": "/analysis-sets/IGVFDS5448FWBW/",
        "accession": "IGVFDS5448FWBW",
        "file_set_type": "intermediate analysis",
        "samples": [
            {
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                "accession": "IGVFSM2682GVVD",
                "classifications": [
                    "differentiated cell specimen",
                    "multiplexed sample"
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                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 3 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 4 days, male, Homo sapiens; ... and 21 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
    },
    "file_size": 167840704,
    "gene_list_for": [],
    "href": "/matrix-files/IGVFFI3143UHIU/@@download/IGVFFI3143UHIU.h5",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "1dd74e3eb4564362d01ac0df85bec162",
    "principal_dimension": "cell",
    "quality_metrics": [],
    "reference_files": [
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        "/reference-files/IGVFFI3944QOJF/"
    ],
    "release_timestamp": "2025-03-07T06:03:59.575825+00:00",
    "s3_uri": "s3://igvf-files/2025/02/14/32bb4e55-31e5-4b93-8c7d-79b89da4af25/IGVFFI3143UHIU.h5",
    "schema_version": "7",
    "secondary_dimensions": [
        "gene"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf0/e0l1_raw_feature_bc_matrix.h5",
    "summary": "cell by gene in raw feature barcode matrix",
    "upload_status": "validated",
    "uuid": "32bb4e55-31e5-4b93-8c7d-79b89da4af25",
    "workflow": {
        "@id": "/workflows/IGVFWF1453HVEC/",
        "name": "Satpathy Cell Ranger",
        "uniform_pipeline": false
    }
}