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IGVFFI3108PBUQ

released
validated
File Set
IGVFDS7801YPEU(scATAC-seq: fragments, peaks, signal, sparse peak count matrix)
Summary
cell by peak in sparse peak count matrix
Analysis Step Version
/analysis-step-versions/4b52b7fa-e00e-4fc8-b653-ab0ca32174ba/
File Format
mtx
Content Type
sparse peak count matrix
Content Summary
cell by peak in sparse peak count matrix
Aliases
jay-shendure:matrixfile_CREs_scATAC_PeaksByCellCountMatrix_LaLanne
md5sum
34cc6470486fd6dddfdcd2cc79dba8a6
Content MD5sum
eaf65943d1c64e3d43c5099587afb73d
File Size
470 MB
Submitted File Name
/net/shendure/vol1/home/martin91/IGVF/forupload/scQers/peak_by_cell_matrix_exported_ArchR_PeakMatrix_mEB_day21_20241120.mtx.gz
Checkfiles Version
v16

Matrix Details

Principal Dimension
cell
Secondary Dimensions
peak

File Format Specifications

Samples

4 items
Sample Terms
Summary
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB), male, Mus musculus WD44
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB), male, Mus musculus WD44
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneA), male, Mus musculus WD44
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneA), male, Mus musculus WD44

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
fasta
genome reference
GRCm39 genome reference
External Lab, Community
871 MB
validated

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
peaks
Jay Shendure, UW
2.7 MB
validated

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW