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IGVFFI3108PBUQ

released
validated
File Set
IGVFDS7801YPEU(scATAC-seq)
Summary
cell by peak in sparse peak count matrix
Analysis Step Version
/analysis-step-versions/4b52b7fa-e00e-4fc8-b653-ab0ca32174ba/
File Format
mtx
Content Type
sparse peak count matrix
Content Summary
cell by peak in sparse peak count matrix
Aliases
jay-shendure:matrixfile_CREs_scATAC_PeaksByCellCountMatrix_LaLanne
md5sum
34cc6470486fd6dddfdcd2cc79dba8a6
Content MD5sum
eaf65943d1c64e3d43c5099587afb73d
File Size
470 MB
Submitted File Name
/net/shendure/vol1/home/martin91/IGVF/forupload/scQers/peak_by_cell_matrix_exported_ArchR_PeakMatrix_mEB_day21_20241120.mtx.gz
Checkfiles Version
v16
Attribution
Jay Shendure, UW

Matrix Details

Principal Dimension
cell
Secondary Dimensions
peak

File Format Specifications

Samples

4 items
Sample Terms
Summary
InVitroSystem
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB)
InVitroSystem
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB)
InVitroSystem
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneA)
InVitroSystem
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneA)

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
fasta
genome reference
GRCm39 genome reference
External Lab, Community
871 MB
validated

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
peaks
Jay Shendure, UW
2.7 MB
validated