IGVFFI2913XBHC

1{
2    "@context": "/terms/",
3    "@id": "/matrix-files/IGVFFI2913XBHC/",
4    "@type": [
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6        "File",
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9    "accession": "IGVFFI2913XBHC",
10    "analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
11    "assay_titles": [
12        "Parse SPLiT-seq"
13    ],
14    "audit": {},
15    "award": {
16        "@id": "/awards/HG012077/",
17        "component": "mapping"
18    },
19    "checkfiles_version": "v20",
20    "content_md5sum": "567f05283bf359f2173b209850cf1d6a",
21    "content_summary": "cell by gene in sparse gene count matrix",
22    "content_type": "sparse gene count matrix",
23    "creation_timestamp": "2025-04-06T22:35:15.399871+00:00",
24    "derived_from": [
25        "/sequence-files/IGVFFI6732GVIW/",
26        "/sequence-files/IGVFFI7256AJTI/",
27        "/sequence-files/IGVFFI4237DCSM/",
28        "/sequence-files/IGVFFI2198UJXI/",
29        "/sequence-files/IGVFFI5931WBNI/",
30        "/sequence-files/IGVFFI2420GFOO/",
31        "/sequence-files/IGVFFI6230ULWX/",
32        "/sequence-files/IGVFFI1072IPCN/",
33        "/sequence-files/IGVFFI1362SVPH/",
34        "/sequence-files/IGVFFI2274LVST/",
35        "/sequence-files/IGVFFI7114USQO/",
36        "/sequence-files/IGVFFI8895LRJS/",
37        "/sequence-files/IGVFFI7109HKIY/",
38        "/sequence-files/IGVFFI7109LKWW/",
39        "/sequence-files/IGVFFI1069LCBI/",
40        "/sequence-files/IGVFFI2424IMYP/"
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48        "@type": [
49            "AnalysisSet",
50            "FileSet",
51            "Item"
52        ],
53        "accession": "IGVFDS6907GONR",
54        "file_set_type": "intermediate analysis",
55        "samples": [
56            {
57                "@id": "/multiplexed-samples/IGVFSM9645SRDN/",
58                "@type": [
59                    "MultiplexedSample",
60                    "Sample",
61                    "Item"
62                ],
63                "accession": "IGVFSM9645SRDN",
64                "classifications": [
65                    "tissue",
66                    "multiplexed sample"
67                ],
68                "disease_terms": [],
69                "modifications": [],
70                "sample_terms": [
71                    {
72                        "@id": "/sample-terms/UBERON_0000007/",
73                        "status": "released",
74                        "term_name": "pituitary gland"
75                    },
76                    {
77                        "@id": "/sample-terms/UBERON_0001898/",
78                        "status": "released",
79                        "term_name": "hypothalamus"
80                    },
81                    {
82                        "@id": "/sample-terms/UBERON_0002107/",
83                        "status": "released",
84                        "term_name": "liver"
85                    }
86                ],
87                "status": "released",
88                "summary": "multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 190 more samples",
89                "taxa": "Mus musculus",
90                "treatments": []
91            }
92        ],
93        "status": "released",
94        "summary": "Parse SPLiT-seq: sparse gene count matrix"
95    },
96    "file_size": 1614431697,
97    "gene_list_for": [],
98    "href": "/matrix-files/IGVFFI2913XBHC/@@download/IGVFFI2913XBHC.tar.gz",
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100        "/matrix-files/IGVFFI8712OENP/",
101        "/matrix-files/IGVFFI1622ZYWL/"
102    ],
103    "integrated_in": [],
104    "lab": {
105        "@id": "/labs/ali-mortazavi/",
106        "title": "Ali Mortazavi, UCI"
107    },
108    "loci_list_for": [],
109    "md5sum": "d9ea753aac44cc35c10b0a0f9c888467",
110    "principal_dimension": "cell",
111    "quality_metrics": [
112        "/single-cell-rna-seq-quality-metrics/e3245d98-032d-4f56-8748-c86ca37981fb/"
113    ],
114    "reference_files": [
115        "/reference-files/IGVFFI9282QLXO/",
116        "/reference-files/IGVFFI9744VSJF/"
117    ],
118    "release_timestamp": "2025-04-19T02:57:59.059424+00:00",
119    "s3_uri": "s3://igvf-files/2025/04/06/ad5e77bd-382d-4631-a340-f1ec4b15d1ca/IGVFFI2913XBHC.tar.gz",
120    "schema_version": "7",
121    "secondary_dimensions": [
122        "gene"
123    ],
124    "status": "released",
125    "submitted_by": {
126        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
127        "title": "Diane Trout"
128    },
129    "submitted_file_name": "igvf_005/igvf_005_Subpool_2_total+core.tar.gz",
130    "summary": "cell by gene in sparse gene count matrix",
131    "upload_status": "validated",
132    "uuid": "ad5e77bd-382d-4631-a340-f1ec4b15d1ca",
133    "workflow": {
134        "@id": "/workflows/IGVFWF6241JYDF/",
135        "name": "UCI snRNA-seq workflow"
136    }
137}