{
"@context": "/terms/",
"@id": "/matrix-files/IGVFFI2733DASR/",
"@type": [
"MatrixFile",
"File",
"Item"
],
"accession": "IGVFFI2733DASR",
"aliases": [
"ansuman-satpathy:igvf9_raw_rna_counts_10x2"
],
"analysis_step_version": "/analysis-step-versions/072beaf9-db5c-4bb3-9d63-e5cf7ee29dd6/",
"assay_titles": [
"10x multiome with MULTI-seq"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released matrix file [IGVFFI2733DASR](/matrix-files/IGVFFI2733DASR/) has in progress subobject reference file [IGVFFI3944QOJF](/reference-files/IGVFFI3944QOJF/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/matrix-files/IGVFFI2733DASR/"
},
{
"category": "mismatched status",
"detail": "Released matrix file [IGVFFI2733DASR](/matrix-files/IGVFFI2733DASR/) has in progress subobject reference file [IGVFFI8311QXYM](/reference-files/IGVFFI8311QXYM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/matrix-files/IGVFFI2733DASR/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"checkfiles_version": "v14",
"content_summary": "cell by gene in raw feature barcode matrix",
"content_type": "raw feature barcode matrix",
"creation_timestamp": "2025-01-28T15:37:54.482234+00:00",
"derived_from": [
"/sequence-files/IGVFFI3919MNJT/",
"/sequence-files/IGVFFI9202YRAH/",
"/sequence-files/IGVFFI3552KANN/",
"/sequence-files/IGVFFI8045BKNA/",
"/sequence-files/IGVFFI2674MLDJ/",
"/sequence-files/IGVFFI4573DBVN/",
"/sequence-files/IGVFFI5886WMKB/",
"/sequence-files/IGVFFI4871CJVP/",
"/sequence-files/IGVFFI9011EHAQ/",
"/sequence-files/IGVFFI0366NSOV/",
"/sequence-files/IGVFFI5584TCVB/",
"/sequence-files/IGVFFI9988VCOT/"
],
"file_format": "hdf5",
"file_format_specifications": [
"/documents/e18648f3-63a8-47e0-be86-2670f0cb68f0/"
],
"file_set": {
"@id": "/analysis-sets/IGVFDS6435ALNY/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "IGVFDS6435ALNY",
"file_set_type": "intermediate analysis",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM2512OHNK/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM2512OHNK",
"classifications": [
"differentiated cell specimen",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"status": "released",
"term_name": "B cell"
}
],
"status": "released",
"summary": "multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
"file_size": 218377467,
"gene_list_for": [],
"href": "/matrix-files/IGVFFI2733DASR/@@download/IGVFFI2733DASR.h5",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"loci_list_for": [],
"md5sum": "1c263f35ae013777352ff154fb15626a",
"principal_dimension": "cell",
"quality_metrics": [],
"reference_files": [
"/reference-files/IGVFFI8311QXYM/",
"/reference-files/IGVFFI3944QOJF/"
],
"release_timestamp": "2025-03-22T00:42:52.823923+00:00",
"s3_uri": "s3://igvf-files/2025/01/28/d018b13c-2c2b-4af6-be99-0e9fa38f9fb0/IGVFFI2733DASR.h5",
"schema_version": "7",
"secondary_dimensions": [
"gene"
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf9/e9l2_raw_feature_bc_matrix.h5",
"summary": "cell by gene in raw feature barcode matrix",
"upload_status": "validated",
"uuid": "d018b13c-2c2b-4af6-be99-0e9fa38f9fb0",
"workflow": {
"@id": "/workflows/IGVFWF1453HVEC/",
"name": "Satpathy Cell Ranger",
"uniform_pipeline": false
}
}