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IGVFFI2668HIRN

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS7845HWEA(scRNA-seq)
Summary
cell by gene expression in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/ed0d80a9-1fc7-484a-9668-750558fc383d/
File Format
h5ad
Content Type
sparse gene count matrix
Content Summary
cell by gene expression in sparse gene count matrix
Aliases
harinder-singh:multiplexed_perturbation_scRNAseq_20240212_mira_mtx
md5sum
686d9d7b93d680601d5024c3cc312d48
File Size
2.5 GB
Submitted File Name
/media/RAIDArray/Nick/20240206_PerturbSeq_Exp2/h5_files/tf_perturbseq_rep2_post_mira.h5ad
Checkfiles Version
v20
Attribution
Harinder Singh, University of Pittsburgh

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene expression

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
MIRA matrix file format
file format specification

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days; ... and 12 more samples

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
gtf
transcriptome reference
GRCh38 GENCODE 44 transcriptome reference
Ansuman Satpathy, Stanford
62 MB
validated

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
h5ad
sparse gene count matrix
Harinder Singh, University of Pittsburgh
1.2 GB
validated