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IGVFFI2641LMFU

released
validated
File Set
IGVFDS2018URDY(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
cell by gene in raw feature barcode matrix
Analysis Step Version
/analysis-step-versions/072beaf9-db5c-4bb3-9d63-e5cf7ee29dd6/
File Format
hdf5
Content Type
raw feature barcode matrix
Content Summary
cell by gene in raw feature barcode matrix
Aliases
ansuman-satpathy:igvf10_raw_rna_counts_10x1
md5sum
ee77c8bc88b1ebbf2fd2c076f5f04ebf
File Size
251 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf10/e10l1_raw_feature_bc_matrix.h5
Checkfiles Version
v14

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Preview
Raw RNA count matrix definition for 10x multiome
file format specification

Samples

2 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples
MultiplexedSample
multiplexed sample: Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples

Files This File Derives From

8 items
fastq
reads
Ansuman Satpathy, Stanford
2.9 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
28 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.9 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
13 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
13 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.9 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.9 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
28 GB
validated

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford