IGVFFI2560RYCC

{
    "@context": "/terms/",
    "@id": "/matrix-files/IGVFFI2560RYCC/",
    "@type": [
        "MatrixFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI2560RYCC",
    "aliases": [
        "ali-mortazavi:IGVF_B01_Subpool_4_total+core_replacement"
    ],
    "analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
    "assay_titles": [
        "Parse SPLiT-seq"
    ],
    "audit": {
        "NOT_COMPLIANT": [
            {
                "category": "missing file format specifications",
                "detail": "Matrix file [IGVFFI2560RYCC](/matrix-files/IGVFFI2560RYCC/) has no `file_format_specifications`. Matrix files are expected to link to a file format specifications document describing the axes and layers of the file.",
                "level": 50,
                "level_name": "NOT_COMPLIANT",
                "name": "audit_file_no_file_format_specifications",
                "path": "/matrix-files/IGVFFI2560RYCC/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG012077/",
        "component": "mapping"
    },
    "content_md5sum": "8a2d3188378db60ec3a46053af01582e",
    "content_summary": "cell by gene in sparse gene count matrix",
    "content_type": "sparse gene count matrix",
    "creation_timestamp": "2024-10-09T20:53:57.724620+00:00",
    "derived_from": [
        "/sequence-files/IGVFFI4373RWTV/",
        "/sequence-files/IGVFFI2185ZXQY/",
        "/sequence-files/IGVFFI4299WSBH/",
        "/sequence-files/IGVFFI5598BXFK/"
    ],
    "file_format": "tar",
    "file_set": {
        "@id": "/analysis-sets/IGVFDS2413FYLA/",
        "accession": "IGVFDS2413FYLA",
        "file_set_type": "intermediate analysis",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM9603DIDI/",
                "accession": "IGVFSM9603DIDI",
                "classifications": [
                    "tissue",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "status": "released",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CAST/EiJ (72 days); left cerebral cortex tissue, male, Mus musculus C57BL/6J (72 days); ... and 6 more samples",
                "taxa": "Mus musculus",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "Parse SPLiT-seq: sparse gene count matrix"
    },
    "file_size": 413572800,
    "gene_list_for": [],
    "href": "/matrix-files/IGVFFI2560RYCC/@@download/IGVFFI2560RYCC.tar.gz",
    "input_file_for": [
        "/matrix-files/IGVFFI7274KDWO/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ali-mortazavi/",
        "title": "Ali Mortazavi, UCI"
    },
    "loci_list_for": [],
    "md5sum": "2c702d297098fff029adeafaf4af6b81",
    "principal_dimension": "cell",
    "quality_metrics": [],
    "reference_files": [
        "/reference-files/IGVFFI9282QLXO/",
        "/reference-files/IGVFFI9744VSJF/"
    ],
    "release_timestamp": "2025-02-05T23:17:33.480249+00:00",
    "s3_uri": "s3://igvf-files/2024/10/09/54c0f4bf-fc3d-4bc4-adfc-bc10ead0b9d4/IGVFFI2560RYCC.tar.gz",
    "schema_version": "7",
    "secondary_dimensions": [
        "gene"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
        "title": "Diane Trout"
    },
    "submitted_file_name": "IGVF_B01_Subpool_4_total+core.tar.gz",
    "summary": "cell by gene in sparse gene count matrix",
    "upload_status": "validated",
    "uuid": "54c0f4bf-fc3d-4bc4-adfc-bc10ead0b9d4",
    "workflow": {
        "@id": "/workflows/IGVFWF6241JYDF/",
        "name": "UCI snRNA-seq workflow"
    }
}