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IGVFFI2238JIOM

released
validated
File Set
IGVFDS2296EFNK(HiCAR: contact matrix)
Summary
genomic position by genomic position in contact matrix
Analysis Step Version
/analysis-step-versions/32996b0a-9d1f-4cfe-9e75-1f62f1f93d60/
File Format
cool
Content Type
contact matrix
Content Summary
genomic position by genomic position in contact matrix
Aliases
charles-gersbach:matrix-file-crispra-region3-1umET1-ipsc-cm-targeted-hicar-rep2-cool
md5sum
19df3c09dba05a643757c076dc827936
File Size
7.5 MB
Submitted File Name
/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/cooler/human/VP64_TA448_2_stim.1000.cool

Matrix Details

Principal Dimension
genomic position
Secondary Dimensions
genomic position

File Format Specifications

1 item
Page
Description
Type
Download
Preview
Contact matrix cool files
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens treated with 1 μM Endothelin-1 for 3 days, transfected with a guide library

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
fasta
genome reference
GRCh38 genome reference
External Lab, Community
984 MB
validated

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
mcool
contact matrix
Charles Gersbach, Duke
33 MB
validated

Files Derived From This File

2 items
tsv
bin paired count
GRCh38 bin paired count
Charles Gersbach, Duke
2.0 KB
validated
tsv
bin paired count
GRCh38 bin paired count
Charles Gersbach, Duke
2.1 KB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke