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IGVFFI2214RERT

released
validated
File Set
IGVFDS1583PWNS(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
cell by gene in raw feature barcode matrix
Analysis Step Version
/analysis-step-versions/072beaf9-db5c-4bb3-9d63-e5cf7ee29dd6/
File Format
hdf5
Content Type
raw feature barcode matrix
Content Summary
cell by gene in raw feature barcode matrix
Aliases
ansuman-satpathy:igvf2_raw_rna_counts_10x1
md5sum
52994faf3852c33247bcaced05defd8f
File Size
184 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf2/e2l1_raw_feature_bc_matrix.h5
Checkfiles Version
v14
Attribution
Ansuman Satpathy, Stanford

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Preview
Raw RNA count matrix definition for 10x multiome
file format specification

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) TeloHAEC cell line treated with 10 ng/mL tumor necrosis factor alpha for 4 hours; Homo sapiens (female) TeloHAEC cell line; ... and 7 more samples

Files This File Derives From

8 items
fastq
reads
Ansuman Satpathy, Stanford
6.6 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.6 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
14 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
6.4 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.6 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
14 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.7 GB
validated