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INDEXED
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MatrixFile
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IGVFFI2131BDZV
IGVFFI2131BDZV
released
validated
Json view
File Set
IGVFDS2562CZKX
(HiCAR: contact matrix)
Summary
genomic position by genomic position in contact matrix
Analysis Step Version
/analysis-step-versions/32996b0a-9d1f-4cfe-9e75-1f62f1f93d60/
File Format
cool
Content Type
contact matrix
Content Summary
genomic position by genomic position in contact matrix
Aliases
charles-gersbach:matrix-file-crispra-control-mouse-hl1-targeted-hicar-rep2-cool
md5sum
d0c2721987ee21b93d9bd95e86a52f1e
File Size
12 MB
Submitted File Name
/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/cooler/mouse/HL1_TA432_NT_2_ctrl.1000.cool
Matrix Details
Principal Dimension
genomic position
Secondary Dimensions
genomic position
File Format Specifications
1 item
Page
Description
Type
Download
Preview
Contact matrix cool files
file format specification
Cooler___supplementary_data.pdf
Download Cooler___supplementary_data.pdf
Download Cooler___supplementary_data.pdf
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM8571KCNL
InVitroSystem
HL-1
HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library
Reference Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI6815WBWB
fasta
genome reference
GRCh38 genome reference
External Lab, Community
984 MB
validated
Files This File Derives From
1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
IGVFFI4035YXBX
IGVFDS2562CZKX
mcool
contact matrix
Charles Gersbach, Duke
52 MB
validated
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI4745FFZE
tsv
bin paired count
GRCm39 bin paired count
Charles Gersbach, Duke
2.1 KB
validated
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke