{
"@context": "/terms/",
"@id": "/matrix-files/IGVFFI2056JLMX/",
"@type": [
"MatrixFile",
"File",
"Item"
],
"accession": "IGVFFI2056JLMX",
"analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
"assay_titles": [
"Parse SPLiT-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping"
},
"checkfiles_version": "v20",
"content_md5sum": "3389ab6a87d7e362c5bd77f0309c308b",
"content_summary": "cell by gene in sparse gene count matrix",
"content_type": "sparse gene count matrix",
"creation_timestamp": "2025-04-06T23:12:53.954028+00:00",
"derived_from": [
"/sequence-files/IGVFFI8887QYSY/",
"/sequence-files/IGVFFI9887KVKJ/",
"/sequence-files/IGVFFI2921PAHO/",
"/sequence-files/IGVFFI3082LJCL/"
],
"file_format": "tar",
"file_format_specifications": [
"/documents/2cee36ca-8fc9-4918-8138-4f98384ee19a/"
],
"file_set": {
"@id": "/analysis-sets/IGVFDS2966EFNN/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "IGVFDS2966EFNN",
"file_set_type": "intermediate analysis",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM7128PWFB/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM7128PWFB",
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"status": "released",
"term_name": "left cerebral cortex"
},
{
"@id": "/sample-terms/NTR_0000750/",
"status": "released",
"term_name": "left hippocampal formation"
},
{
"@id": "/sample-terms/UBERON_0000007/",
"status": "released",
"term_name": "pituitary gland"
},
{
"@id": "/sample-terms/UBERON_0000948/",
"status": "released",
"term_name": "heart"
},
{
"@id": "/sample-terms/UBERON_0001388/",
"status": "released",
"term_name": "gastrocnemius"
},
{
"@id": "/sample-terms/UBERON_0001898/",
"status": "released",
"term_name": "hypothalamus"
},
{
"@id": "/sample-terms/UBERON_0002369/",
"status": "released",
"term_name": "adrenal gland"
}
],
"status": "released",
"summary": "multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) heart tissue; Mus musculus NZO/H1LtJ (female, 69 days) left cerebral cortex tissue; ... and 12 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
"file_size": 149317682,
"gene_list_for": [],
"href": "/matrix-files/IGVFFI2056JLMX/@@download/IGVFFI2056JLMX.tar.gz",
"input_file_for": [
"/matrix-files/IGVFFI5074IKKL/",
"/matrix-files/IGVFFI0996MCPQ/",
"/matrix-files/IGVFFI8712OENP/",
"/matrix-files/IGVFFI1830EGOB/",
"/matrix-files/IGVFFI6950RMDV/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"loci_list_for": [],
"md5sum": "3ebd45ad570736e3fb5ab1a7dc765b86",
"principal_dimension": "cell",
"quality_metrics": [
"/single-cell-rna-seq-quality-metrics/1cc3a906-35d4-4fdf-9ac2-d632d671f7f3/"
],
"reference_files": [
"/reference-files/IGVFFI9282QLXO/",
"/reference-files/IGVFFI9744VSJF/"
],
"release_timestamp": "2025-04-19T18:15:12.491390+00:00",
"s3_uri": "s3://igvf-files/2025/04/06/bbd64bcf-a691-480c-af58-b6b202dfe0be/IGVFFI2056JLMX.tar.gz",
"schema_version": "7",
"secondary_dimensions": [
"gene"
],
"status": "released",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_file_name": "igvf_012/igvf_012_Subpool_8_total+core.tar.gz",
"summary": "cell by gene in sparse gene count matrix",
"upload_status": "validated",
"uuid": "bbd64bcf-a691-480c-af58-b6b202dfe0be",
"workflow": {
"@id": "/workflows/IGVFWF6241JYDF/",
"name": "UCI snRNA-seq workflow"
}
}