IGVFFI1352JUOS

1{
2    "@context": "/terms/",
3    "@id": "/matrix-files/IGVFFI1352JUOS/",
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6        "File",
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10    "analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
11    "assay_titles": [
12        "Parse SPLiT-seq"
13    ],
14    "audit": {},
15    "award": {
16        "@id": "/awards/HG012077/",
17        "component": "mapping"
18    },
19    "checkfiles_version": "v20",
20    "content_md5sum": "99d6417fb1be3a4231001c1170be5415",
21    "content_summary": "cell by gene in sparse gene count matrix",
22    "content_type": "sparse gene count matrix",
23    "creation_timestamp": "2025-04-06T22:35:38.244911+00:00",
24    "derived_from": [
25        "/sequence-files/IGVFFI8270FJNT/",
26        "/sequence-files/IGVFFI1755OHOY/",
27        "/sequence-files/IGVFFI0084ZZAH/",
28        "/sequence-files/IGVFFI9386JLVX/",
29        "/sequence-files/IGVFFI0591OQZC/",
30        "/sequence-files/IGVFFI9324HTPG/",
31        "/sequence-files/IGVFFI2862ESZW/",
32        "/sequence-files/IGVFFI9812DMGF/",
33        "/sequence-files/IGVFFI9459XIDK/",
34        "/sequence-files/IGVFFI3132PGIV/",
35        "/sequence-files/IGVFFI1176PPXJ/",
36        "/sequence-files/IGVFFI2190VOWM/",
37        "/sequence-files/IGVFFI8145IOXF/",
38        "/sequence-files/IGVFFI6695TVUE/",
39        "/sequence-files/IGVFFI8851GRMY/",
40        "/sequence-files/IGVFFI1100OCHD/"
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42    "file_format": "tar",
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51            "Item"
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54        "file_set_type": "intermediate analysis",
55        "samples": [
56            {
57                "@id": "/multiplexed-samples/IGVFSM6927OEBZ/",
58                "@type": [
59                    "MultiplexedSample",
60                    "Sample",
61                    "Item"
62                ],
63                "accession": "IGVFSM6927OEBZ",
64                "classifications": [
65                    "tissue",
66                    "multiplexed sample"
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68                "disease_terms": [],
69                "modifications": [],
70                "sample_terms": [
71                    {
72                        "@id": "/sample-terms/UBERON_0000007/",
73                        "status": "released",
74                        "term_name": "pituitary gland"
75                    },
76                    {
77                        "@id": "/sample-terms/UBERON_0001898/",
78                        "status": "released",
79                        "term_name": "hypothalamus"
80                    },
81                    {
82                        "@id": "/sample-terms/UBERON_0002107/",
83                        "status": "released",
84                        "term_name": "liver"
85                    }
86                ],
87                "status": "released",
88                "summary": "multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 190 more samples",
89                "taxa": "Mus musculus",
90                "treatments": []
91            }
92        ],
93        "status": "released",
94        "summary": "Parse SPLiT-seq: sparse gene count matrix"
95    },
96    "file_size": 1742225251,
97    "gene_list_for": [],
98    "href": "/matrix-files/IGVFFI1352JUOS/@@download/IGVFFI1352JUOS.tar.gz",
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100        "/matrix-files/IGVFFI8712OENP/",
101        "/matrix-files/IGVFFI1622ZYWL/"
102    ],
103    "integrated_in": [],
104    "lab": {
105        "@id": "/labs/ali-mortazavi/",
106        "title": "Ali Mortazavi, UCI"
107    },
108    "loci_list_for": [],
109    "md5sum": "29eb008ad0768b3127b8b283addd8494",
110    "principal_dimension": "cell",
111    "quality_metrics": [
112        "/single-cell-rna-seq-quality-metrics/690e453f-c258-4f02-b89e-17cc599b3368/"
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114    "reference_files": [
115        "/reference-files/IGVFFI9282QLXO/",
116        "/reference-files/IGVFFI9744VSJF/"
117    ],
118    "release_timestamp": "2025-04-19T02:58:54.383981+00:00",
119    "s3_uri": "s3://igvf-files/2025/04/06/5c4165b8-e844-46e2-be47-309e7e1ec32d/IGVFFI1352JUOS.tar.gz",
120    "schema_version": "7",
121    "secondary_dimensions": [
122        "gene"
123    ],
124    "status": "released",
125    "submitted_by": {
126        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
127        "title": "Diane Trout"
128    },
129    "submitted_file_name": "igvf_005/igvf_005_Subpool_3_total+core.tar.gz",
130    "summary": "cell by gene in sparse gene count matrix",
131    "upload_status": "validated",
132    "uuid": "5c4165b8-e844-46e2-be47-309e7e1ec32d",
133    "workflow": {
134        "@id": "/workflows/IGVFWF6241JYDF/",
135        "name": "UCI snRNA-seq workflow"
136    }
137}