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IGVFFI1208NQXL

released
validated
File Set
IGVFDS5270GNCH(Parse SPLiT-seq: sparse gene count matrix)
Summary
cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/1744edca-744a-465d-aacb-afaffa942057/
File Format
h5ad
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
md5sum
a998f107a4c54e488e135760b0b95751
File Size
725 MB
Submitted File Name
Trem2_Liver_adata_annotated.h5ad
Checkfiles Version
v20
Attribution
Ali Mortazavi, UCI

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Preview
File format description for the annotated by tissue h5ad files
file format specification

Samples

4 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Mus musculus B6(SJL)-Trem2<em1Aduci>/J (female, 65 days) hypothalamus tissue; Mus musculus B6(SJL)-Trem2<em1Aduci>/J (male, 69 days) liver tissue; ... and 94 more samples
MultiplexedSample
multiplexed sample: Mus musculus B6(SJL)-Trem2<em1Aduci>/J (female, 65 days) hypothalamus tissue; Mus musculus B6(SJL)-Trem2<em1Aduci>/J (male, 69 days) liver tissue; ... and 94 more samples
MultiplexedSample
multiplexed sample: Mus musculus B6(SJL)-Trem2<em1Aduci>/J (female, 65 days) hypothalamus tissue; Mus musculus B6(SJL)-Trem2<em1Aduci>/J (male, 69 days) liver tissue; ... and 94 more samples
MultiplexedSample
multiplexed sample: Mus musculus B6(SJL)-Trem2<em1Aduci>/J (female, 65 days) hypothalamus tissue; Mus musculus B6(SJL)-Trem2<em1Aduci>/J (male, 69 days) liver tissue; ... and 94 more samples

Reference Files

2 items
fasta
genome reference
GRCm39 genome reference
External Lab, Community
871 MB
validated
gtf
transcriptome reference
GRCm39 GENCODE M32 transcriptome reference
External Lab, Community
29 MB
validated

Files This File Derives From

4 items
tar
sparse gene count matrix
Ali Mortazavi, UCI
924 MB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
893 MB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
958 MB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
925 MB
validated