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IGVFFI1152NRZL

released
validated
File Set
IGVFDS0751LIZC(Parse SPLiT-seq: sparse gene count matrix)
Summary
cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/1744edca-744a-465d-aacb-afaffa942057/
File Format
h5ad
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
md5sum
72d6938b79a4259ae3a8f49ff1db69b7
File Size
27 GB
Submitted File Name
GonadsMale_integrated_processed_annotated.h5ad
Checkfiles Version
v20
Attribution
Ali Mortazavi, UCI

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Preview
File format description for the annotated by tissue h5ad files
file format specification

Samples

36 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 254 more samples
MultiplexedSample
multiplexed sample: Mus musculus AJ (male, 69 days) epididymis tissue; Mus musculus PWK/PhJ (female, 69 days) oviduct tissue; ... and 190 more samples
MultiplexedSample
multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 254 more samples
MultiplexedSample
multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 254 more samples
MultiplexedSample
multiplexed sample: Mus musculus AJ (male, 69 days) epididymis tissue; Mus musculus PWK/PhJ (female, 69 days) oviduct tissue; ... and 190 more samples
MultiplexedSample
multiplexed sample: Mus musculus AJ (male, 69 days) epididymis tissue; Mus musculus PWK/PhJ (female, 69 days) oviduct tissue; ... and 190 more samples
MultiplexedSample
multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 254 more samples
MultiplexedSample
multiplexed sample: Mus musculus AJ (male, 69 days) epididymis tissue; Mus musculus PWK/PhJ (female, 69 days) oviduct tissue; ... and 190 more samples
MultiplexedSample
multiplexed sample: Mus musculus AJ (male, 69 days) epididymis tissue; Mus musculus PWK/PhJ (female, 69 days) oviduct tissue; ... and 190 more samples
MultiplexedSample
multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 254 more samples

Reference Files

2 items
fasta
genome reference
GRCm39 genome reference
External Lab, Community
871 MB
validated
gtf
transcriptome reference
GRCm39 GENCODE M32 transcriptome reference
External Lab, Community
29 MB
validated

Files This File Derives From

36 items
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.3 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.4 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.5 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.7 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.6 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.5 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.8 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.2 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.6 GB
validated
tar
sparse gene count matrix
Ali Mortazavi, UCI
1.9 GB
validated