IGVFFI1046XIIV

1{
2    "@context": "/terms/",
3    "@id": "/matrix-files/IGVFFI1046XIIV/",
4    "@type": [
5        "MatrixFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI1046XIIV",
10    "analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
11    "assay_titles": [
12        "Parse SPLiT-seq"
13    ],
14    "audit": {},
15    "award": {
16        "@id": "/awards/HG012077/",
17        "component": "mapping"
18    },
19    "checkfiles_version": "v20",
20    "content_md5sum": "476d43449ea3605e6984e3f5622476ce",
21    "content_summary": "cell by gene in sparse gene count matrix",
22    "content_type": "sparse gene count matrix",
23    "creation_timestamp": "2025-04-06T22:29:50.907219+00:00",
24    "derived_from": [
25        "/sequence-files/IGVFFI6944UJFB/",
26        "/sequence-files/IGVFFI9419OSOA/",
27        "/sequence-files/IGVFFI7073FLTD/",
28        "/sequence-files/IGVFFI2737WTLK/",
29        "/sequence-files/IGVFFI8278GPXW/",
30        "/sequence-files/IGVFFI0296TETT/",
31        "/sequence-files/IGVFFI7230WRUB/",
32        "/sequence-files/IGVFFI8079TNAG/",
33        "/sequence-files/IGVFFI9936KMXK/",
34        "/sequence-files/IGVFFI6301PPMM/",
35        "/sequence-files/IGVFFI2005DKQW/",
36        "/sequence-files/IGVFFI1205PJAX/",
37        "/sequence-files/IGVFFI7396VOAU/",
38        "/sequence-files/IGVFFI3916AZAQ/",
39        "/sequence-files/IGVFFI9682COWR/",
40        "/sequence-files/IGVFFI8894XONI/",
41        "/sequence-files/IGVFFI8928HNPF/",
42        "/sequence-files/IGVFFI3448TNAM/"
43    ],
44    "file_format": "tar",
45    "file_format_specifications": [
46        "/documents/2cee36ca-8fc9-4918-8138-4f98384ee19a/"
47    ],
48    "file_set": {
49        "@id": "/analysis-sets/IGVFDS7371CIFX/",
50        "@type": [
51            "AnalysisSet",
52            "FileSet",
53            "Item"
54        ],
55        "accession": "IGVFDS7371CIFX",
56        "file_set_type": "intermediate analysis",
57        "samples": [
58            {
59                "@id": "/multiplexed-samples/IGVFSM5599MYMJ/",
60                "@type": [
61                    "MultiplexedSample",
62                    "Sample",
63                    "Item"
64                ],
65                "accession": "IGVFSM5599MYMJ",
66                "classifications": [
67                    "tissue",
68                    "multiplexed sample"
69                ],
70                "disease_terms": [],
71                "modifications": [],
72                "sample_terms": [
73                    {
74                        "@id": "/sample-terms/UBERON_0000948/",
75                        "status": "released",
76                        "term_name": "heart"
77                    },
78                    {
79                        "@id": "/sample-terms/UBERON_0002107/",
80                        "status": "released",
81                        "term_name": "liver"
82                    }
83                ],
84                "status": "released",
85                "summary": "multiplexed sample: Mus musculus CAST/EiJ (male, 69 days) liver tissue; Mus musculus 129S1J (female, 72 days) heart tissue; ... and 126 more samples",
86                "taxa": "Mus musculus",
87                "treatments": []
88            }
89        ],
90        "status": "released",
91        "summary": "Parse SPLiT-seq: sparse gene count matrix"
92    },
93    "file_size": 1502231280,
94    "gene_list_for": [],
95    "href": "/matrix-files/IGVFFI1046XIIV/@@download/IGVFFI1046XIIV.tar.gz",
96    "input_file_for": [
97        "/matrix-files/IGVFFI6950RMDV/",
98        "/matrix-files/IGVFFI1622ZYWL/"
99    ],
100    "integrated_in": [],
101    "lab": {
102        "@id": "/labs/ali-mortazavi/",
103        "title": "Ali Mortazavi, UCI"
104    },
105    "loci_list_for": [],
106    "md5sum": "90a54312b1552eb00aa816415fd1daa3",
107    "principal_dimension": "cell",
108    "quality_metrics": [
109        "/single-cell-rna-seq-quality-metrics/606b2896-2f2a-4d78-80a6-92303f6f6d45/"
110    ],
111    "reference_files": [
112        "/reference-files/IGVFFI9282QLXO/",
113        "/reference-files/IGVFFI9744VSJF/"
114    ],
115    "release_timestamp": "2025-04-19T17:50:29.713071+00:00",
116    "s3_uri": "s3://igvf-files/2025/04/06/18a3e68e-0e7e-41af-96b8-46832cd53a27/IGVFFI1046XIIV.tar.gz",
117    "schema_version": "7",
118    "secondary_dimensions": [
119        "gene"
120    ],
121    "status": "released",
122    "submitted_by": {
123        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
124        "title": "Diane Trout"
125    },
126    "submitted_file_name": "igvf_004/igvf_004_Subpool_2_total+core.tar.gz",
127    "summary": "cell by gene in sparse gene count matrix",
128    "upload_status": "validated",
129    "uuid": "18a3e68e-0e7e-41af-96b8-46832cd53a27",
130    "workflow": {
131        "@id": "/workflows/IGVFWF6241JYDF/",
132        "name": "UCI snRNA-seq workflow"
133    }
134}