IGVFFI0981BEOP

released
validated
{
    "@context": "/terms/",
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    "@type": [
        "MatrixFile",
        "File",
        "Item"
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    "accession": "IGVFFI0981BEOP",
    "aliases": [
        "ansuman-satpathy:igvf1_raw_rna_counts_10x2"
    ],
    "analysis_step_version": "/analysis-step-versions/072beaf9-db5c-4bb3-9d63-e5cf7ee29dd6/",
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released matrix file [IGVFFI0981BEOP](/matrix-files/IGVFFI0981BEOP/) has in progress subobject reference file [IGVFFI8311QXYM](/reference-files/IGVFFI8311QXYM/).",
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                "name": "audit_item_status",
                "path": "/matrix-files/IGVFFI0981BEOP/"
            },
            {
                "category": "mismatched status",
                "detail": "Released matrix file [IGVFFI0981BEOP](/matrix-files/IGVFFI0981BEOP/) has in progress subobject reference file [IGVFFI3944QOJF](/reference-files/IGVFFI3944QOJF/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
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                "path": "/matrix-files/IGVFFI0981BEOP/"
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        ]
    },
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization"
    },
    "checkfiles_version": "v14",
    "content_summary": "cell by gene in raw feature barcode matrix",
    "content_type": "raw feature barcode matrix",
    "creation_timestamp": "2025-01-28T15:33:41.262017+00:00",
    "derived_from": [
        "/sequence-files/IGVFFI0605ORIY/",
        "/sequence-files/IGVFFI5809HGKP/",
        "/sequence-files/IGVFFI8903GQTU/",
        "/sequence-files/IGVFFI7090WVNY/",
        "/sequence-files/IGVFFI5567DOCL/",
        "/sequence-files/IGVFFI0877NKND/",
        "/sequence-files/IGVFFI0339ZACP/",
        "/sequence-files/IGVFFI2202GIPC/"
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    "file_set": {
        "@id": "/analysis-sets/IGVFDS8205NXKP/",
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                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
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                        "@id": "/sample-terms/EFO_0002067/",
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                        "status": "released",
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                        "@id": "/sample-terms/EFO_0022838/",
                        "status": "released",
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                ],
                "status": "released",
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                "taxa": "Homo sapiens",
                "treatments": []
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                        "@id": "/sample-terms/EFO_0002869/",
                        "status": "released",
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                        "@id": "/sample-terms/EFO_0022838/",
                        "status": "released",
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                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
    },
    "file_size": 204369209,
    "gene_list_for": [],
    "href": "/matrix-files/IGVFFI0981BEOP/@@download/IGVFFI0981BEOP.h5",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "c8139f75505795702df4cb219d7bf630",
    "principal_dimension": "cell",
    "quality_metrics": [],
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    "release_timestamp": "2025-03-07T06:04:05.921507+00:00",
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    "schema_version": "7",
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    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf1/e1l2_raw_feature_bc_matrix.h5",
    "summary": "cell by gene in raw feature barcode matrix",
    "upload_status": "validated",
    "uuid": "87c1f000-2910-4d7c-8251-5d6ad77e28bf",
    "workflow": {
        "@id": "/workflows/IGVFWF1453HVEC/",
        "name": "Satpathy Cell Ranger",
        "uniform_pipeline": false
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}