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IGVFFI0632CXYX

released
validated
File Set
IGVFDS8684JYYS(Parse SPLiT-seq: sparse gene count matrix)
Summary
cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/
File Format
tar
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
md5sum
fd72dcdd7ccea0446568d93978eeb0d1
Content MD5sum
1dc6d5f0e79117f94bb1c83243ac491e
File Size
1.4 GB
Submitted File Name
igvf_010/igvf_010_Subpool_5_total+core.tar.gz
Checkfiles Version
v20
Attribution
Ali Mortazavi, UCI

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Preview
File format description for tar.gz archives of kallisto matrix market output
file format specification

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus WSB/EiJ (male, 69 days) kidney tissue; ... and 126 more samples

Reference Files

2 items
fasta
genome reference
GRCm39 genome reference
External Lab, Community
871 MB
validated
gtf
transcriptome reference
GRCm39 GENCODE M32 transcriptome reference
External Lab, Community
29 MB
validated

Files This File Derives From

18 items
fastq
reads
Ali Mortazavi, UCI
5.3 GB
validated
fastq
reads
Ali Mortazavi, UCI
12 GB
validated
fastq
reads
Ali Mortazavi, UCI
10 GB
validated
fastq
reads
Ali Mortazavi, UCI
10 GB
validated
fastq
reads
Ali Mortazavi, UCI
25 GB
validated
fastq
reads
Ali Mortazavi, UCI
5.6 GB
validated
fastq
reads
Ali Mortazavi, UCI
5.7 GB
validated
fastq
reads
Ali Mortazavi, UCI
5.3 GB
validated
fastq
reads
Ali Mortazavi, UCI
5.7 GB
validated
fastq
reads
Ali Mortazavi, UCI
45 GB
validated

Files Derived From This File

2 items
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
31 GB
validated
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
62 GB
validated