Home

IGVFFI0536JASN

released
validated
File Set
IGVFDS4026VJME(single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
cell by gene in raw feature barcode matrix
Analysis Step Version
/analysis-step-versions/072beaf9-db5c-4bb3-9d63-e5cf7ee29dd6/
File Format
hdf5
Content Type
raw feature barcode matrix
Content Summary
cell by gene in raw feature barcode matrix
Aliases
ansuman-satpathy:igvf17_raw_rna_counts_10x2
md5sum
a5033e1fd26776c9e5a9fd193bf867a5
File Size
166 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf17/e17l2_raw_feature_bc_matrix.h5
Checkfiles Version
v14
Attribution
Ansuman Satpathy, Stanford

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Raw RNA count matrix definition for 10x multiome
file format specification

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 2 days; Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 1 day; ... and 10 more samples

Reference Files

2 items
gtf
transcriptome reference
GRCh38 GENCODE 44 transcriptome reference
Ansuman Satpathy, Stanford
62 MB
validated
fasta
genome reference
GRCh38 GENCODE 44 genome reference
Ansuman Satpathy, Stanford
882 MB
validated

Files This File Derives From

16 items
fastq
reads
Ansuman Satpathy, Stanford
5.1 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
11 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
11 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.3 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.3 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
11 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
5.1 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.3 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.4 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
5.1 GB
validated