IGVFFI0500LLBC

1{
2    "@context": "/terms/",
3    "@id": "/matrix-files/IGVFFI0500LLBC/",
4    "@type": [
5        "MatrixFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI0500LLBC",
10    "aliases": [
11        "buenrostro-bernstein:IGVFDS7496XAWN_matrix_file"
12    ],
13    "analysis_step_version": "/analysis-step-versions/9c457b9f-fc6d-4cf1-b249-218827e9b449/",
14    "assay_titles": [
15        "SHARE-seq"
16    ],
17    "audit": {},
18    "award": {
19        "@id": "/awards/HG011986/",
20        "component": "mapping"
21    },
22    "checkfiles_version": "v20",
23    "content_summary": "cell by gene in sparse gene count matrix",
24    "content_type": "sparse gene count matrix",
25    "creation_timestamp": "2025-03-27T00:20:11.996960+00:00",
26    "derived_from": [
27        "/sequence-files/IGVFFI2352SZMI/",
28        "/sequence-files/IGVFFI4599BEHH/",
29        "/sequence-files/IGVFFI4371FJPY/",
30        "/sequence-files/IGVFFI0129OQOG/",
31        "/sequence-files/IGVFFI1179JRYX/",
32        "/sequence-files/IGVFFI8293BFAC/",
33        "/configuration-files/IGVFFI8781PWYP/",
34        "/configuration-files/IGVFFI2261FPNI/",
35        "/configuration-files/IGVFFI4515HUNL/"
36    ],
37    "file_format": "h5ad",
38    "file_format_specifications": [
39        {
40            "@id": "/documents/6a6baaba-6bea-4283-9eb5-a1b4cd4a3a67/",
41            "description": "Specification of matrix h5 generated by https://github.com/IGVF/single-cell-pipeline"
42        }
43    ],
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51        "accession": "IGVFDS7496XAWN",
52        "data_use_limitation_summaries": [
53            "no certificate"
54        ],
55        "file_set_type": "intermediate analysis",
56        "samples": [
57            {
58                "@id": "/tissues/IGVFSM1149LLIF/",
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60                    "Tissue",
61                    "Biosample",
62                    "Sample",
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66                "classifications": [
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69                "sample_terms": [
70                    {
71                        "@id": "/sample-terms/UBERON_0000955/",
72                        "status": "released",
73                        "term_name": "brain"
74                    }
75                ],
76                "status": "released",
77                "summary": "Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 432)",
78                "taxa": "Mus musculus"
79            }
80        ],
81        "status": "released",
82        "summary": "single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)"
83    },
84    "file_size": 1169785632,
85    "filtered": false,
86    "gene_list_for": [],
87    "href": "/matrix-files/IGVFFI0500LLBC/@@download/IGVFFI0500LLBC.h5ad",
88    "input_file_for": [],
89    "integrated_in": [],
90    "lab": {
91        "@id": "/labs/jason-buenrostro/",
92        "title": "Jason Buenrostro, Broad"
93    },
94    "loci_list_for": [],
95    "md5sum": "eab8bade444751c3f9b12ff25250ad93",
96    "principal_dimension": "cell",
97    "quality_metrics": [
98        "/single-cell-rna-seq-quality-metrics/fe0d6015-55f9-4c15-979c-293805e6a2b9/"
99    ],
100    "reference_files": [
101        "/reference-files/IGVFFI5078MNED/",
102        "/reference-files/IGVFFI5593VLWB/"
103    ],
104    "release_timestamp": "2025-05-07T20:35:05.816149+00:00",
105    "s3_uri": "s3://igvf-files/2025/03/27/5ffe3160-be44-4d97-b9e9-2d58e2c797b4/IGVFFI0500LLBC.h5ad",
106    "schema_version": "8",
107    "secondary_dimensions": [
108        "gene"
109    ],
110    "status": "released",
111    "submitted_by": {
112        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
113        "title": "Siddarth Wekhande"
114    },
115    "submitted_file_name": "gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/1d455597-b132-452b-8b75-bf2db8c76d2e/single_cell_pipeline/37c6f33e-77c3-4424-9360-fe4be37474a2/call-rna/wf_rna/33e7c1df-60d8-4e49-b334-2fa8c15d799a/call-kb/SS-PKR-433.h5ad",
116    "summary": "unfiltered cell by gene in sparse gene count matrix",
117    "upload_status": "validated",
118    "uuid": "5ffe3160-be44-4d97-b9e9-2d58e2c797b4",
119    "workflow": {
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121        "name": "igvf single cell uniform pipeline",
122        "uniform_pipeline": true
123    }
124}