Home

IGVFFI0468AHGV

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS4003HZAB(CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
cell by CRISPR guide capture in raw feature barcode matrix
Analysis Step Version
/analysis-step-versions/65c095ee-8330-48d0-bc03-d930326fe393/
File Format
pkl
Content Type
raw feature barcode matrix
Content Summary
cell by CRISPR guide capture in raw feature barcode matrix
Aliases
gary-hon:CM_Pilot_2_Lenti_RNA_pkl
md5sum
e6d7916d4e341ed04f18ffa489054b85
File Size
5.2 GB
Submitted File Name
/project/GCRB/Hon_lab/s215194/Single_Cell/Process_scRNA_CMPILOT2_Lenti/_pipeline_reprocessing/_all_lanes_combined/aggr_dataframe/aggr_combined_df_full.pkl
Checkfiles Version
Legacy version of checkfiles
Attribution
Gary Hon, UT

Matrix Details

Principal Dimension
cell
Secondary Dimensions
CRISPR guide capture

Samples

8 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW262) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW263) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW264) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW261) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW268) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW266) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW267) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW265) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
gtf
transcriptome reference
GRCh38 GENCODE 32 transcriptome reference
External Lab, Community
55 MB
validated

Files This File Derives From

128 items
fastq
reads
Gary Hon, UT
1.7 GB
validated
fastq
reads
Gary Hon, UT
529 MB
validated
fastq
reads
Gary Hon, UT
1.5 GB
validated
fastq
reads
Gary Hon, UT
3.8 GB
validated
fastq
reads
Gary Hon, UT
1.7 GB
validated
fastq
reads
Gary Hon, UT
4.5 GB
validated
fastq
reads
Gary Hon, UT
298 MB
validated
fastq
reads
Gary Hon, UT
1.7 GB
validated
fastq
reads
Gary Hon, UT
829 MB
validated
fastq
reads
Gary Hon, UT
144 MB
validated

Files Derived From This File

3 items
csv
unfiltered local differential expression
GRCh38 GENCODE 32 unfiltered local differential expression
Gary Hon, UT
5.7 KB
validated
csv
unfiltered global differential expression
GRCh38 GENCODE 32 unfiltered global differential expression
Gary Hon, UT
273 KB
validated
h5ad
sparse gene count matrix
cell by gene expression in sparse gene count matrix
Gary Hon, UT
21 GB
validated