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IGVFFI0315UORM

released
validated
File Set
IGVFDS5536ZQMO(SHARE-seq: fragments, sparse gene count matrix)
Summary
unfiltered cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/45d73e29-280a-4faf-9762-c1b4c655b689/
File Format
h5ad
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
Aliases
buenrostro-bernstein:surya-mouse-colitis-organoid-rna-matrix
md5sum
d99b8ab309161a8ff391b85a4dc74d4d
File Size
282 MB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/processed-data/mouse_organoids.RNA.raw_counts.h5
Checkfiles Version
v17

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Preview
Specification of matrix h5 generated by https://github.com/masai1116/SHARE-seq-alignmentV2
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days

Files This File Derives From

8 items
fastq
reads
Jason Buenrostro, Broad
16 GB
validated
fastq
reads
Jason Buenrostro, Broad
20 GB
validated
fastq
reads
Jason Buenrostro, Broad
21 GB
validated
fastq
reads
Jason Buenrostro, Broad
16 GB
validated
fastq
reads
Jason Buenrostro, Broad
3.6 GB
validated
fastq
reads
Jason Buenrostro, Broad
18 GB
validated
fastq
reads
Jason Buenrostro, Broad
18 GB
validated
fastq
reads
Jason Buenrostro, Broad
3.8 GB
validated

Attribution

Award
HG011986
Principal Investigator(s)
Contact P.I.
Jason Buenrostro
Lab
Jason Buenrostro, Broad