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IGVFFI0296TMZO

released
validated
File Set
IGVFDS8898JDCK(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
cell by gene in raw feature barcode matrix
Analysis Step Version
/analysis-step-versions/072beaf9-db5c-4bb3-9d63-e5cf7ee29dd6/
File Format
hdf5
Content Type
raw feature barcode matrix
Content Summary
cell by gene in raw feature barcode matrix
Aliases
ansuman-satpathy:igvf5_raw_rna_counts_10x3
md5sum
8ccb8c5341948d6979367b5b6c34ee5a
File Size
138 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf5/e5l3_raw_feature_bc_matrix.h5
Checkfiles Version
v14

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Preview
Raw RNA count matrix definition for 10x multiome
file format specification

Samples

4 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; ... and 6 more samples
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; ... and 6 more samples
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; ... and 6 more samples
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; ... and 6 more samples

Files This File Derives From

16 items
fastq
reads
Ansuman Satpathy, Stanford
10 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
846 MB
validated
fastq
reads
Ansuman Satpathy, Stanford
892 MB
validated
fastq
reads
Ansuman Satpathy, Stanford
6.2 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
4.9 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
4.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.3 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.3 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.3 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.8 GB
validated

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford