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IGVFFI0203LSQK

released
validated
File Set
IGVFDS0899XPYZ(Parse SPLiT-seq: sparse gene count matrix)
Summary
cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/
File Format
tar
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
md5sum
f21c66b20ca3613ae575ed12d6eaedfd
Content MD5sum
29e4b4293df7fd4814d5070f30d3b651
File Size
1.4 GB
Submitted File Name
igvf_008b/igvf_008b_Subpool_6_total+core.tar.gz
Checkfiles Version
v20
Attribution
Ali Mortazavi, UCI

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Preview
File format description for tar.gz archives of kallisto matrix market output
file format specification

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Mus musculus AJ (male, 69 days) epididymis tissue; Mus musculus PWK/PhJ (female, 69 days) oviduct tissue; ... and 190 more samples

Reference Files

2 items
fasta
genome reference
GRCm39 genome reference
External Lab, Community
871 MB
validated
gtf
transcriptome reference
GRCm39 GENCODE M32 transcriptome reference
External Lab, Community
29 MB
validated

Files This File Derives From

8 items
fastq
reads
Ali Mortazavi, UCI
19 GB
validated
fastq
reads
Ali Mortazavi, UCI
9.6 GB
validated
fastq
reads
Ali Mortazavi, UCI
19 GB
validated
fastq
reads
Ali Mortazavi, UCI
9.7 GB
validated
fastq
reads
Ali Mortazavi, UCI
18 GB
validated
fastq
reads
Ali Mortazavi, UCI
9.7 GB
validated
fastq
reads
Ali Mortazavi, UCI
19 GB
validated
fastq
reads
Ali Mortazavi, UCI
9.5 GB
validated

Files Derived From This File

3 items
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
30 GB
validated
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
27 GB
validated
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
50 GB
validated