IGVFFI0153FJWJ

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10    "aliases": [
11        "ansuman-satpathy:igvf11_raw_rna_counts_10x4"
12    ],
13    "analysis_step_version": "/analysis-step-versions/072beaf9-db5c-4bb3-9d63-e5cf7ee29dd6/",
14    "assay_titles": [
15        "10x multiome with MULTI-seq"
16    ],
17    "audit": {},
18    "award": {
19        "@id": "/awards/HG011972/",
20        "component": "functional characterization"
21    },
22    "checkfiles_version": "v14",
23    "content_summary": "cell by gene in raw feature barcode matrix",
24    "content_type": "raw feature barcode matrix",
25    "creation_timestamp": "2025-01-28T23:06:45.948153+00:00",
26    "derived_from": [
27        "/sequence-files/IGVFFI5653UGYL/",
28        "/sequence-files/IGVFFI2989EVRF/",
29        "/sequence-files/IGVFFI0807IMSL/",
30        "/sequence-files/IGVFFI2029TAMT/",
31        "/sequence-files/IGVFFI6001CIBT/",
32        "/sequence-files/IGVFFI3153SRRQ/",
33        "/sequence-files/IGVFFI0985MPWL/",
34        "/sequence-files/IGVFFI2470GRMJ/"
35    ],
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40            "description": "Raw RNA count matrix definition for 10x multiome"
41        }
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52        "data_use_limitation_summaries": [
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55        "file_set_type": "intermediate analysis",
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58                "@id": "/multiplexed-samples/IGVFSM8200CKYL/",
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61                    "Sample",
62                    "Item"
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64                "accession": "IGVFSM8200CKYL",
65                "classifications": [
66                    "differentiated cell specimen",
67                    "multiplexed sample"
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69                "disease_terms": [],
70                "modifications": [],
71                "sample_terms": [
72                    {
73                        "@id": "/sample-terms/EFO_0005904/",
74                        "status": "released",
75                        "term_name": "H7-hESC"
76                    },
77                    {
78                        "@id": "/sample-terms/EFO_0009747/",
79                        "status": "released",
80                        "term_name": "GM25256 (WTC-11)"
81                    }
82                ],
83                "status": "released",
84                "summary": "multiplexed sample: Homo sapiens (female) H7-hESC differentiated cell specimen; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days; ... and 10 more samples",
85                "taxa": "Homo sapiens",
86                "treatments": []
87            }
88        ],
89        "status": "released",
90        "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
91    },
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96    "integrated_in": [],
97    "lab": {
98        "@id": "/labs/ansuman-satpathy/",
99        "title": "Ansuman Satpathy, Stanford"
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103    "principal_dimension": "cell",
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105    "reference_files": [
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107        "/reference-files/IGVFFI3944QOJF/"
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109    "release_timestamp": "2025-03-07T06:05:06.203810+00:00",
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111    "schema_version": "7",
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115    "status": "released",
116    "submitted_by": {
117        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
118        "title": "Christopher Mcginnis"
119    },
120    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf11/e11l4_raw_feature_bc_matrix.h5",
121    "summary": "cell by gene in raw feature barcode matrix",
122    "upload_status": "validated",
123    "uuid": "61844030-97bf-4dd8-9df1-95e3be035644",
124    "workflow": {
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126        "name": "Satpathy Cell Ranger",
127        "uniform_pipeline": false
128    }
129}