{
"@context": "/terms/",
"@id": "/matrix-files/IGVFFI0153FJWJ/",
"@type": [
"MatrixFile",
"File",
"Item"
],
"accession": "IGVFFI0153FJWJ",
"aliases": [
"ansuman-satpathy:igvf11_raw_rna_counts_10x4"
],
"analysis_step_version": "/analysis-step-versions/072beaf9-db5c-4bb3-9d63-e5cf7ee29dd6/",
"assay_titles": [
"10x multiome with MULTI-seq"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released matrix file [IGVFFI0153FJWJ](/matrix-files/IGVFFI0153FJWJ/) has in progress subobject reference file [IGVFFI3944QOJF](/reference-files/IGVFFI3944QOJF/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/matrix-files/IGVFFI0153FJWJ/"
},
{
"category": "mismatched status",
"detail": "Released matrix file [IGVFFI0153FJWJ](/matrix-files/IGVFFI0153FJWJ/) has in progress subobject reference file [IGVFFI8311QXYM](/reference-files/IGVFFI8311QXYM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/matrix-files/IGVFFI0153FJWJ/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"checkfiles_version": "v14",
"content_summary": "cell by gene in raw feature barcode matrix",
"content_type": "raw feature barcode matrix",
"creation_timestamp": "2025-01-28T23:06:45.948153+00:00",
"derived_from": [
"/sequence-files/IGVFFI5653UGYL/",
"/sequence-files/IGVFFI2989EVRF/",
"/sequence-files/IGVFFI0807IMSL/",
"/sequence-files/IGVFFI2029TAMT/",
"/sequence-files/IGVFFI6001CIBT/",
"/sequence-files/IGVFFI3153SRRQ/",
"/sequence-files/IGVFFI0985MPWL/",
"/sequence-files/IGVFFI2470GRMJ/"
],
"file_format": "hdf5",
"file_format_specifications": [
"/documents/e18648f3-63a8-47e0-be86-2670f0cb68f0/"
],
"file_set": {
"@id": "/analysis-sets/IGVFDS8136ENRY/",
"accession": "IGVFDS8136ENRY",
"file_set_type": "intermediate analysis",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM6160ZDRZ/",
"accession": "IGVFSM6160ZDRZ",
"classifications": [
"differentiated cell specimen",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0005904/",
"status": "released",
"term_name": "H7-hESC"
},
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": []
},
{
"@id": "/multiplexed-samples/IGVFSM8200CKYL/",
"accession": "IGVFSM8200CKYL",
"classifications": [
"differentiated cell specimen",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0005904/",
"status": "released",
"term_name": "H7-hESC"
},
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": []
},
{
"@id": "/multiplexed-samples/IGVFSM9487HFQW/",
"accession": "IGVFSM9487HFQW",
"classifications": [
"differentiated cell specimen",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0005904/",
"status": "released",
"term_name": "H7-hESC"
},
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": []
},
{
"@id": "/multiplexed-samples/IGVFSM9367PJMT/",
"accession": "IGVFSM9367PJMT",
"classifications": [
"differentiated cell specimen",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0005904/",
"status": "released",
"term_name": "H7-hESC"
},
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
"file_size": 143424018,
"gene_list_for": [],
"href": "/matrix-files/IGVFFI0153FJWJ/@@download/IGVFFI0153FJWJ.h5",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"loci_list_for": [],
"md5sum": "5b24dad7eb418a57c0f267790102d953",
"principal_dimension": "cell",
"quality_metrics": [],
"reference_files": [
"/reference-files/IGVFFI8311QXYM/",
"/reference-files/IGVFFI3944QOJF/"
],
"release_timestamp": "2025-03-07T06:05:06.203810+00:00",
"s3_uri": "s3://igvf-files/2025/01/28/61844030-97bf-4dd8-9df1-95e3be035644/IGVFFI0153FJWJ.h5",
"schema_version": "7",
"secondary_dimensions": [
"gene"
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf11/e11l4_raw_feature_bc_matrix.h5",
"summary": "cell by gene in raw feature barcode matrix",
"upload_status": "validated",
"uuid": "61844030-97bf-4dd8-9df1-95e3be035644",
"workflow": {
"@id": "/workflows/IGVFWF1453HVEC/",
"name": "Satpathy Cell Ranger",
"uniform_pipeline": false
}
}