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IGVFFI0035TUYI

released
validated
File Set
IGVFDS4681TSQU(single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq))
Summary
unfiltered cell by gene in kallisto single cell RNAseq output
Analysis Step Version
/analysis-step-versions/9c457b9f-fc6d-4cf1-b249-218827e9b449/
File Format
tar
Content Type
kallisto single cell RNAseq output
Content Summary
cell by gene in kallisto single cell RNAseq output
Aliases
buenrostro-bernstein:IGVFDS4681TSQU_rna_kb_output_folder_tar_gz
md5sum
089e52013b0314f9765f13a79aa523c5
Content MD5sum
5a4d71f8c978fd7d3c231f7395de805b
File Size
6.1 GB
Submitted File Name
gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/1d455597-b132-452b-8b75-bf2db8c76d2e/single_cell_pipeline/dbe66b20-ce01-402b-bd70-5e9d0d878ab2/call-rna/wf_rna/650f1e3d-8c7f-41d5-96f5-a304c31e9308/call-kb/SS-PKR-435.tar.gz
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

2 items
Page
Preview
Specification of matrix tar generated by https://github.com/IGVF/single-cell-pipeline
file format specification
Specification of each mtx and txt file in matrix tar file from single cell RNA uniform pipeline
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 435)

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tar
transcriptome index
GRCm39 GENCODE M36 transcriptome index
External Lab, Community
1.7 GB
validated

Files This File Derives From

9 items
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
fastq
reads
Jason Buenrostro, Broad
12 GB
validated
fastq
reads
Jason Buenrostro, Broad
7.3 GB
validated
fastq
reads
Jason Buenrostro, Broad
17 GB
validated
fastq
reads
Jason Buenrostro, Broad
9.6 GB
validated
fastq
reads
Jason Buenrostro, Broad
12 GB
validated
fastq
reads
Jason Buenrostro, Broad
7.2 GB
validated