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HCT116 — IGVFSM5799ZEJH

released
Summary
HCT116 cell line, male, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library
Sample Terms
Classification
cell line
Sex
male
Originated From Sample
IGVFSM5760JFFX
Age
unknown
Construct Library Sets
  • IGVFDS9869EMNE guide (sgRNA) library targeting accessible genome regions in 29 genomic loci
Taxa
Homo sapiens
Sources
atcc
Aliases
jesse-engreitz:in-vitro-system_CRUDO_TAPseq-Auxin0hrs-Rep1

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_HCT116
male
Homo sapiens

File Sets

3 items
gRNA sequencing for mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci
  • jesse-engreitz:auxiliary_CRUDO_TAPseq-Auxin0hrs-Rep1
Jesse Engreitz, Stanford
mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci
  • jesse-engreitz:measurement_CRUDO_TAPseq-Auxin0hrs-Rep1
Jesse Engreitz, Stanford
degradation, interference TAP-seq: differential element quantifications, guide quantifications
  • jesse-engreitz:analysis_set_CRUDO_TAPseq
Jesse Engreitz, Stanford

Modifications

2 items
interference
degradation

Documents

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford