{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM5799ZEJH/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5799ZEJH",
"age": "unknown",
"aliases": [
"jesse-engreitz:in-vitro-system_CRUDO_TAPseq-Auxin0hrs-Rep1"
],
"audit": {},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"classifications": [
"cell line"
],
"construct_library_sets": [
"/construct-library-sets/IGVFDS9869EMNE/"
],
"creation_timestamp": "2024-05-23T22:08:10.860387+00:00",
"demultiplexed_to": [],
"documents": [
"/documents/a1a19741-90cc-46ea-b90c-96c4a4b70d8e/",
"/documents/b0663905-6249-42ea-9937-9b2f645c787d/"
],
"donors": [
"/human-donors/IGVFDO0384OZRW/"
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS3171OFHP/",
"accession": "IGVFDS3171OFHP",
"aliases": [
"jesse-engreitz:measurement_CRUDO_TAPseq-Auxin0hrs-Rep1"
],
"assay_term": {
"term_name": "in vitro CRISPR screen using single-cell RNA-seq"
},
"lab": {
"title": "Jesse Engreitz, Stanford"
},
"status": "released",
"summary": "TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci"
},
{
"@id": "/auxiliary-sets/IGVFDS0282GEHF/",
"accession": "IGVFDS0282GEHF",
"aliases": [
"jesse-engreitz:auxiliary_CRUDO_TAPseq-Auxin0hrs-Rep1"
],
"lab": {
"title": "Jesse Engreitz, Stanford"
},
"status": "released",
"summary": "gRNA sequencing for TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci"
},
{
"@id": "/analysis-sets/IGVFDS5308EMCG/",
"accession": "IGVFDS5308EMCG",
"aliases": [
"jesse-engreitz:analysis_set_CRUDO_TAPseq"
],
"lab": {
"title": "Jesse Engreitz, Stanford"
},
"status": "in progress",
"summary": "principal analysis of TAP-seq data"
}
],
"institutional_certificates": [],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"modifications": [
{
"@id": "/crispr-modifications/8543fa06-1720-4e7d-8e8f-7e24c1b1cf79/",
"modality": "interference",
"status": "released",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"multiplexed_in": [],
"notes": "This sample's modifications originally included Modification /modifications/56d6a4f4-5fa4-4989-890e-aafb032f1e7d/ which was deleted and replaced with a Crispr Modification igvf:replacement_of_56d6a4f4-5fa4-4989-890e-aafb032f1e7d.",
"origin_of": [],
"originated_from": {
"@id": "/in-vitro-systems/IGVFSM5760JFFX/",
"accession": "IGVFSM5760JFFX"
},
"parts": [],
"pooled_in": [],
"release_timestamp": "2024-07-10T19:53:27.739765+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"term_name": "HCT116"
}
],
"schema_version": "23",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/atcc/",
"title": "ATCC"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/3bd6f74c-8cf3-4c35-a94d-0c7c11654815/",
"title": "Chongyon Park"
},
"summary": "HCT116 cell line, male, Homo sapiens modified with a guide library",
"taxa": "Homo sapiens",
"uuid": "706cfd9d-8827-4d29-b31a-f7520dd6caf0",
"virtual": false
}