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colonic epithelium — IGVFSM4239FRER

released
Summary
Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days
Sample Terms
Classification
organoid
Sex
unspecified
Age
unknown
Targeted Sample Term
colon
Time Post Change
27 day
Cell Fate Change Protocol
cell-fate-change-treatment.txt
Taxa
Mus musculus
Sources
jackson-labs
Aliases
buenrostro-bernstein:surya-DSS21BC-DSS-m1,DSS21BC-DSS-m2,DSS21BC-DSS-m3,DSS21BC-DSS-m7,DSS21BC-DSS-m8,DSS21BC-DSS-m9
Attribution
Jason Buenrostro, Broad

Donors

6 items
Aliases
  • buenrostro-bernstein:surya-DSS21BC-DSS-m2
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS21BC-DSS-m7
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS21BC-DSS-m8
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS21BC-DSS-m1
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS21BC-DSS-m3
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS21BC-DSS-m9
unspecified
Mus musculus

File Sets

9 items
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set35
Jason Buenrostro, Broad
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set34
Jason Buenrostro, Broad
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set37
Jason Buenrostro, Broad
single-cell ATAC-seq (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set33
Jason Buenrostro, Broad
single-cell ATAC-seq (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set31
Jason Buenrostro, Broad
SHARE-seq: fragments, sparse gene count matrix
  • buenrostro-bernstein:surya-mouse-colitis-invitro-analysis-set
Jason Buenrostro, Broad
single-cell ATAC-seq (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set32
Jason Buenrostro, Broad
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set36
Jason Buenrostro, Broad
single-cell ATAC-seq (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set30
Jason Buenrostro, Broad