{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM4239FRER/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4239FRER",
"age": "unknown",
"aliases": [
"buenrostro-bernstein:surya-DSS21BC-DSS-m1,DSS21BC-DSS-m2,DSS21BC-DSS-m3,DSS21BC-DSS-m7,DSS21BC-DSS-m8,DSS21BC-DSS-m9"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM4239FRER](/in-vitro-systems/IGVFSM4239FRER/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM4239FRER/"
}
]
},
"award": {
"@id": "/awards/HG011986/",
"component": "mapping"
},
"cell_fate_change_protocol": "/documents/b1307ee6-f02f-42ef-a523-b0c0903618f0/",
"classifications": [
"organoid"
],
"creation_timestamp": "2025-02-07T18:03:12.884987+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/rodent-donors/IGVFDO5516DGOZ/",
"accession": "IGVFDO5516DGOZ",
"status": "released",
"strain": "C57BL/6J"
},
{
"@id": "/rodent-donors/IGVFDO4379PNRX/",
"accession": "IGVFDO4379PNRX",
"status": "released",
"strain": "C57BL/6J"
},
{
"@id": "/rodent-donors/IGVFDO6069WQXD/",
"accession": "IGVFDO6069WQXD",
"status": "released",
"strain": "C57BL/6J"
},
{
"@id": "/rodent-donors/IGVFDO4498WUFA/",
"accession": "IGVFDO4498WUFA",
"status": "released",
"strain": "C57BL/6J"
},
{
"@id": "/rodent-donors/IGVFDO4618QNAL/",
"accession": "IGVFDO4618QNAL",
"status": "released",
"strain": "C57BL/6J"
},
{
"@id": "/rodent-donors/IGVFDO6240POWU/",
"accession": "IGVFDO6240POWU",
"status": "released",
"strain": "C57BL/6J"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS9059ORGF/",
"accession": "IGVFDS9059ORGF",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set30"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell ATAC-seq (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS3674UEBD/",
"accession": "IGVFDS3674UEBD",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set33"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell ATAC-seq (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS2183INAQ/",
"accession": "IGVFDS2183INAQ",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set37"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell RNA sequencing assay (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS3954OIWN/",
"accession": "IGVFDS3954OIWN",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set31"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell ATAC-seq (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS0262EFJS/",
"accession": "IGVFDS0262EFJS",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set34"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell RNA sequencing assay (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS6770YNZR/",
"accession": "IGVFDS6770YNZR",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set32"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell ATAC-seq (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS0255ZBJH/",
"accession": "IGVFDS0255ZBJH",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set35"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell RNA sequencing assay (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS7053XLPM/",
"accession": "IGVFDS7053XLPM",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set36"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell RNA sequencing assay (SHARE-seq)"
},
{
"@id": "/analysis-sets/IGVFDS5536ZQMO/",
"accession": "IGVFDS5536ZQMO",
"aliases": [
"buenrostro-bernstein:surya-mouse-colitis-invitro-analysis-set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"status": "released",
"summary": "SHARE-seq: fragments, sparse gene count matrix"
}
],
"institutional_certificates": [],
"lab": {
"@id": "/labs/jason-buenrostro/",
"title": "Jason Buenrostro, Broad"
},
"multiplexed_in": [],
"origin_of": [],
"parts": [],
"pooled_in": [],
"release_timestamp": "2025-03-26T17:33:48.782834+00:00",
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0000397/",
"status": "released",
"term_name": "colonic epithelium"
}
],
"schema_version": "26",
"sex": "unspecified",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/jackson-labs/",
"status": "released",
"title": "The Jackson Laboratory"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"summary": "Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0001155/",
"status": "released",
"term_name": "colon"
},
"taxa": "Mus musculus",
"time_post_change": 27,
"time_post_change_units": "day",
"uuid": "201409d7-afdd-41cb-9b29-8a36e419f700",
"virtual": false
}