IGVFFI9901DVKV

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI9901DVKV/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI9901DVKV",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_175_seqspec"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "c6a5eba6c3115266676a15d9de16e2be",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-04-14T19:12:53.279535+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS2721AQQO/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS2721AQQO",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002764/",
36            "term_name": "single-cell ATAC-seq"
37        },
38        "controlled_access": false,
39        "data_use_limitation_summaries": [
40            "No limitations"
41        ],
42        "file_set_type": "experimental data",
43        "samples": [
44            {
45                "@id": "/primary-cells/IGVFSM2223HAHK/",
46                "@type": [
47                    "PrimaryCell",
48                    "Biosample",
49                    "Sample",
50                    "Item"
51                ],
52                "accession": "IGVFSM2223HAHK",
53                "classifications": [
54                    "primary cell"
55                ],
56                "sample_terms": [
57                    {
58                        "@id": "/sample-terms/UBERON_0002371/",
59                        "status": "released",
60                        "term_name": "bone marrow"
61                    }
62                ],
63                "status": "released",
64                "summary": "Homo sapiens bone marrow cell (cellular sub pool: SS-PKR 212)",
65                "taxa": "Homo sapiens"
66            }
67        ],
68        "status": "released",
69        "summary": "single-cell ATAC-seq (SHARE-seq)"
70    },
71    "file_size": 1215,
72    "gene_list_for": [],
73    "href": "/configuration-files/IGVFFI9901DVKV/@@download/IGVFFI9901DVKV.yaml.gz",
74    "input_file_for": [],
75    "integrated_in": [],
76    "lab": {
77        "@id": "/labs/jason-buenrostro/",
78        "title": "Jason Buenrostro, Broad"
79    },
80    "loci_list_for": [],
81    "md5sum": "36e375f5c5b22b26fa5cd704d1a7f7b6",
82    "quality_metrics": [],
83    "release_timestamp": "2025-04-22T04:23:21.401845+00:00",
84    "s3_uri": "s3://igvf-files/2025/04/14/2c75c191-3a3b-483e-8f8d-1dc0325958f4/IGVFFI9901DVKV.yaml.gz",
85    "schema_version": "7",
86    "seqspec_of": [
87        "/sequence-files/IGVFFI3567OWKU/",
88        "/sequence-files/IGVFFI0371QDGZ/"
89    ],
90    "status": "released",
91    "submitted_by": {
92        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
93        "title": "Siddarth Wekhande"
94    },
95    "submitted_file_name": "/Users/swekhand/Documents/GitHub/epi-sw-IGVF-submission/submissions/seqspecs/sai-single-donor-atac-upgraded/SS-LS_175_seqspec.yaml.gz",
96    "summary": "seqspec of IGVFFI3567OWKU, IGVFFI0371QDGZ",
97    "upload_status": "validated",
98    "uuid": "2c75c191-3a3b-483e-8f8d-1dc0325958f4",
99    "validate_onlist_files": true
100}