Home

IGVFFI9888WBKI

released
validation exempted
File Set
IGVFDS0101WKZK(mixed CRISPR FlowFISH screen sorted on the expression of FAM3C integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
seqspec of IGVFFI2578WMMF
File Format
yaml
Content Type
seqspec
Aliases
jesse-engreitz:seqspecfile_CRUDO_FAM3C_Auxin0hrs-FF2-BinA-PCR2-Rep1_S127
md5sum
072a574647e31bc6335ed18dbc40dd77
Content MD5sum
da8f6c82b0f940ba5099fc3bfc9d5174
File Size
914 B
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/guideseq.out.FAM3C_Auxin0hrs-FF2-BinA-PCR2-Rep1_S127.yaml
Checkfiles Version
No version due to exemption
Attribution
Jesse Engreitz, Stanford

seqspec File Of

1 item
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
fastq
reads
1
GTCGCCTT:CCAG
33 MB
Jesse Engreitz, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) HCT116 cell line (sorting details: FACS bin A for 0-10% expression of FAM3C) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library