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INDEXED
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ConfigurationFile
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IGVFFI9886CNPZ
IGVFFI9886CNPZ
released
validated
Json view
File Set
IGVFDS3345HOBS
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI8624YLUN, IGVFFI2781LHMK, IGVFFI3003LRQV, IGVFFI0213GEHC
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp15_rna_10x2_NGS1
md5sum
3252d7449774ff19041480eaaed86193
Content MD5sum
0eceb637ed9f31b03843232ef73b1cb5
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp15_rna_10x2_NGS1_rna_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0213GEHC
fastq
reads
1
Illumina NovaSeq X
22NCFCLT3
1
2.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI2781LHMK
fastq
reads
1
Read 2
Illumina NovaSeq X
22NCFCLT3
1
17 GB
Ansuman Satpathy, Stanford
validated
IGVFFI3003LRQV
fastq
reads
1
Illumina NovaSeq X
22NCFCLT3
1
2.0 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8624YLUN
fastq
reads
1
Read 1
Illumina NovaSeq X
22NCFCLT3
1
8.0 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM0825LHRL
MultiplexedSample
GM25256 (WTC-11)
multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens; ... and 10 more samples
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford