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INDEXED
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ConfigurationFile
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IGVFFI9778WYEU
IGVFFI9778WYEU
released
validated
Json view
File Set
IGVFDS9737YNSX
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI6520SGOM, IGVFFI8231HOHA, IGVFFI5996XIQY, IGVFFI9782UBAM
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp17_atac_10x2_NGS3
md5sum
8c63ad216bdcd0f7573092b486fd5b54
Content MD5sum
22867444f23ec7a76219202ffd4f5847
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp17_atac_10x2_NGS3_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI5996XIQY
fastq
reads
1
Read 2
Illumina NovaSeq X
22NF33LT3
7
7.6 GB
Ansuman Satpathy, Stanford
validated
IGVFFI6520SGOM
fastq
reads
1
Read 1
Illumina NovaSeq X
22NF33LT3
7
7.6 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8231HOHA
fastq
reads
1
Barcode index
Illumina NovaSeq X
22NF33LT3
7
4.3 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9782UBAM
fastq
reads
1
Illumina NovaSeq X
22NF33LT3
7
1.8 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM0198VBOA
MultiplexedSample
RUES2
multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford