IGVFFI9742VKZM

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI9742VKZM/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI9742VKZM",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_8662_seqspec"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "a02f5e22b13363c04bbcb3a98c3ce5b3",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-03-28T18:39:34.539822+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS0387PFFN/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS0387PFFN",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002764/",
36            "term_name": "single-cell ATAC-seq"
37        },
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/in-vitro-systems/IGVFSM6917PRUY/",
42                "@type": [
43                    "InVitroSystem",
44                    "Biosample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM6917PRUY",
49                "classifications": [
50                    "cell line",
51                    "pooled cell specimen"
52                ],
53                "sample_terms": [
54                    {
55                        "@id": "/sample-terms/EFO_0004905/",
56                        "status": "released",
57                        "term_name": "induced pluripotent stem cell"
58                    }
59                ],
60                "status": "released",
61                "summary": "Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 179)",
62                "taxa": "Homo sapiens"
63            }
64        ],
65        "status": "released",
66        "summary": "single-cell ATAC-seq (SHARE-seq)"
67    },
68    "file_size": 1336,
69    "gene_list_for": [],
70    "href": "/configuration-files/IGVFFI9742VKZM/@@download/IGVFFI9742VKZM.yaml.gz",
71    "input_file_for": [],
72    "integrated_in": [],
73    "lab": {
74        "@id": "/labs/jason-buenrostro/",
75        "title": "Jason Buenrostro, Broad"
76    },
77    "loci_list_for": [],
78    "md5sum": "99330d3b772d01a1d17535a7c9ee7125",
79    "quality_metrics": [],
80    "release_timestamp": "2025-04-10T21:13:33.690129+00:00",
81    "s3_uri": "s3://igvf-files/2025/03/28/d6f249a2-6b1c-400c-983f-d35dece7bd23/IGVFFI9742VKZM.yaml.gz",
82    "schema_version": "7",
83    "seqspec_of": [
84        "/sequence-files/IGVFFI6773MLDQ/",
85        "/sequence-files/IGVFFI0982KDZD/",
86        "/sequence-files/IGVFFI9060CKJJ/"
87    ],
88    "status": "released",
89    "submitted_by": {
90        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
91        "title": "Siddarth Wekhande"
92    },
93    "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI6773MLDQ_seqspec.yaml.gz",
94    "summary": "seqspec of IGVFFI6773MLDQ, IGVFFI0982KDZD, IGVFFI9060CKJJ",
95    "upload_status": "validated",
96    "uuid": "d6f249a2-6b1c-400c-983f-d35dece7bd23",
97    "validate_onlist_files": true
98}