IGVFFI9716DPOS

{
    "@context": "/terms/",
    "@id": "/configuration-files/IGVFFI9716DPOS/",
    "@type": [
        "ConfigurationFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI9716DPOS",
    "aliases": [
        "ansuman-satpathy:seqspec_igvf_exp1_atac_10x2_NGS1"
    ],
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "checkfiles_version": "v16",
    "content_md5sum": "201d1a94a725c39cef755635698fbd32",
    "content_type": "seqspec",
    "creation_timestamp": "2024-09-18T02:20:59.779164+00:00",
    "file_format": "yaml",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS3169TEEK/",
        "accession": "IGVFDS3169TEEK",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM8645VILQ/",
                "accession": "IGVFSM8645VILQ",
                "classifications": [
                    "cell line",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0002067/",
                        "status": "released",
                        "term_name": "K562"
                    },
                    {
                        "@id": "/sample-terms/EFO_0002793/",
                        "status": "released",
                        "term_name": "HL-60"
                    },
                    {
                        "@id": "/sample-terms/EFO_0002869/",
                        "status": "released",
                        "term_name": "U2OS"
                    },
                    {
                        "@id": "/sample-terms/EFO_0007598/",
                        "status": "released",
                        "term_name": "HAP-1"
                    },
                    {
                        "@id": "/sample-terms/EFO_0022838/",
                        "status": "released",
                        "term_name": "HUDEP-2"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
    },
    "file_size": 1373,
    "gene_list_for": [],
    "href": "/configuration-files/IGVFFI9716DPOS/@@download/IGVFFI9716DPOS.yaml.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "772e8a7e7e3d021eeb9ce11d99fe8f1b",
    "quality_metrics": [],
    "release_timestamp": "2025-03-07T01:10:32.490581+00:00",
    "s3_uri": "s3://igvf-files/2024/09/18/c3adf946-a3c8-4d31-a6f4-454d4b731564/IGVFFI9716DPOS.yaml.gz",
    "schema_version": "7",
    "seqspec_of": [
        "/sequence-files/IGVFFI0737RLFI/",
        "/sequence-files/IGVFFI5304CPDI/",
        "/sequence-files/IGVFFI0660RPDV/",
        "/sequence-files/IGVFFI4807KWFS/"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp1_atac_10x2_NGS1_atac_seqspec.yaml.gz",
    "summary": "seqspec of IGVFFI0737RLFI, IGVFFI5304CPDI, IGVFFI0660RPDV, IGVFFI4807KWFS",
    "upload_status": "validated",
    "uuid": "c3adf946-a3c8-4d31-a6f4-454d4b731564",
    "validate_onlist_files": true
}