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INDEXED
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IGVFFI9612PBHB
IGVFFI9612PBHB
released
validated
Json view
File Set
IGVFDS7053XLPM
(single-cell RNA sequencing assay (SHARE-seq))
Summary
seqspec of IGVFFI5138TGVX, IGVFFI7632WZNX, IGVFFI6604XHYW
File Format
yaml
Content Type
seqspec
Aliases
buenrostro-bernstein:IGVFFI5138TGVX_seqspec
md5sum
055c07e1c89e001beda742aa505b543b
Content MD5sum
4bc321b46eb5673d86d6446213b110bd
File Size
1.2 KB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/seqspecs/IGVFFI5138TGVX_seqspec.yaml.gz
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
seqspec File Of
3 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI5138TGVX
fastq
reads
1
Read 1
Illumina NovaSeq 6000
18 GB
Jason Buenrostro, Broad
validated
IGVFFI6604XHYW
fastq
reads
1
Barcode index
Illumina NovaSeq 6000
7.3 GB
Jason Buenrostro, Broad
validated
IGVFFI7632WZNX
fastq
reads
1
Read 2
Illumina NovaSeq 6000
18 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM4239FRER
InVitroSystem
colonic epithelium
Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days