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INDEXED
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ConfigurationFile
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IGVFFI9597XVAA
IGVFFI9597XVAA
released
validated
Json view
File Set
IGVFDS1219HABJ
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI6475GJSI, IGVFFI1601CBBX, IGVFFI2967NODE, IGVFFI0725KZJT
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp12_rna_10x2_NGS3
md5sum
03fded700a1f579b43d02ea898991eaa
Content MD5sum
5b3ee6eb6c41a5afa30f25cc3291d238
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_rna_10x2_NGS3_rna_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0725KZJT
fastq
reads
1
Illumina NovaSeq X
225LWLLT3
3
1.3 GB
Ansuman Satpathy, Stanford
validated
IGVFFI1601CBBX
fastq
reads
1
Read 2
Illumina NovaSeq X
225LWLLT3
3
9.3 GB
Ansuman Satpathy, Stanford
validated
IGVFFI2967NODE
fastq
reads
1
Illumina NovaSeq X
225LWLLT3
3
1.3 GB
Ansuman Satpathy, Stanford
validated
IGVFFI6475GJSI
fastq
reads
1
Read 1
Illumina NovaSeq X
225LWLLT3
3
4.2 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5189FTFS
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford