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IGVFFI9557CSJM

released
validated
File Set
IGVFDS6289YQBN(single-cell RNA sequencing assay (SHARE-seq))
Summary
seqspec of IGVFFI4040KVJA, IGVFFI8647WTOX
File Format
yaml
Content Type
seqspec
Aliases
buenrostro-bernstein:SS-LS_3842_seqspec
md5sum
2056cf19d45ab1712829454046b40858
Content MD5sum
713725f6d5428b987d0dca7faaa86331
File Size
1.3 KB
Submitted File Name
gs://sw-igvf-submission/seqspec-v3/pilot-mouse-brain-new-pkr/SS-LS_3842_seqspec.yaml.gz
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad

seqspec File Of

2 items
Read Names
fastq
reads
3842
Read 1
H22KKDRX5
1.1 GB
Jason Buenrostro, Broad
validated
fastq
reads
3842
Read 2, Barcode index
H22KKDRX5
1.9 GB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 436)

Files Derived From This File

2 items
tar
kallisto single cell RNAseq output
unfiltered cell by gene in kallisto single cell RNAseq output
Jason Buenrostro, Broad
6.8 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
1.2 GB
validated