IGVFFI9415DXCN

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI9415DXCN/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI9415DXCN",
10    "assay_titles": [
11        "Parse SPLiT-seq"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012077/",
16        "component": "mapping"
17    },
18    "checkfiles_version": "v17",
19    "content_md5sum": "3b4d02caee64c1bfd63f76c774fbbc22",
20    "content_type": "seqspec",
21    "creation_timestamp": "2024-09-18T21:05:51.707175+00:00",
22    "file_format": "yaml",
23    "file_set": {
24        "@id": "/measurement-sets/IGVFDS5939OGHF/",
25        "@type": [
26            "MeasurementSet",
27            "FileSet",
28            "Item"
29        ],
30        "accession": "IGVFDS5939OGHF",
31        "assay_term": {
32            "@id": "/assay-terms/OBI_0003109/",
33            "term_name": "single-nucleus RNA sequencing assay"
34        },
35        "file_set_type": "experimental data",
36        "samples": [
37            {
38                "@id": "/multiplexed-samples/IGVFSM7258KMGW/",
39                "@type": [
40                    "MultiplexedSample",
41                    "Sample",
42                    "Item"
43                ],
44                "accession": "IGVFSM7258KMGW",
45                "classifications": [
46                    "tissue",
47                    "multiplexed sample"
48                ],
49                "disease_terms": [],
50                "modifications": [],
51                "sample_terms": [
52                    {
53                        "@id": "/sample-terms/NTR_0000646/",
54                        "status": "released",
55                        "term_name": "left cerebral cortex"
56                    },
57                    {
58                        "@id": "/sample-terms/NTR_0000750/",
59                        "status": "released",
60                        "term_name": "left hippocampal formation"
61                    },
62                    {
63                        "@id": "/sample-terms/UBERON_0000007/",
64                        "status": "released",
65                        "term_name": "pituitary gland"
66                    },
67                    {
68                        "@id": "/sample-terms/UBERON_0000948/",
69                        "status": "released",
70                        "term_name": "heart"
71                    },
72                    {
73                        "@id": "/sample-terms/UBERON_0001388/",
74                        "status": "released",
75                        "term_name": "gastrocnemius"
76                    },
77                    {
78                        "@id": "/sample-terms/UBERON_0001898/",
79                        "status": "released",
80                        "term_name": "hypothalamus"
81                    },
82                    {
83                        "@id": "/sample-terms/UBERON_0002369/",
84                        "status": "released",
85                        "term_name": "adrenal gland"
86                    }
87                ],
88                "status": "released",
89                "summary": "multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) heart tissue; Mus musculus NZO/H1LtJ (female, 69 days) left cerebral cortex tissue; ... and 12 more samples",
90                "taxa": "Mus musculus",
91                "treatments": []
92            }
93        ],
94        "status": "released",
95        "summary": "Parse SPLiT-seq"
96    },
97    "file_size": 1345,
98    "gene_list_for": [],
99    "href": "/configuration-files/IGVFFI9415DXCN/@@download/IGVFFI9415DXCN.yaml.gz",
100    "input_file_for": [],
101    "integrated_in": [],
102    "lab": {
103        "@id": "/labs/ali-mortazavi/",
104        "title": "Ali Mortazavi, UCI"
105    },
106    "loci_list_for": [],
107    "md5sum": "a22dde15308e4be2cd7b655b61f27fc6",
108    "quality_metrics": [],
109    "release_timestamp": "2025-04-19T01:58:06.872320+00:00",
110    "s3_uri": "s3://igvf-files/2024/09/18/f207303a-fb72-4014-98ae-da63ce5a0120/IGVFFI9415DXCN.yaml.gz",
111    "schema_version": "7",
112    "seqspec_of": [
113        "/sequence-files/IGVFFI8601YVUZ/",
114        "/sequence-files/IGVFFI7572RVHD/"
115    ],
116    "status": "released",
117    "submitted_by": {
118        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
119        "title": "Diane Trout"
120    },
121    "summary": "seqspec of IGVFFI8601YVUZ, IGVFFI7572RVHD",
122    "upload_status": "validated",
123    "uuid": "f207303a-fb72-4014-98ae-da63ce5a0120",
124    "validate_onlist_files": true
125}