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INDEXED
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ConfigurationFile
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IGVFFI9414BGOP
IGVFFI9414BGOP
released
validated
Json view
File Set
IGVFDS4338ZSWY
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI4855ASAI, IGVFFI8321JOIP, IGVFFI2599QHOU, IGVFFI3057TBTI
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp15_atac_10x1_NGS2
md5sum
2abaac616529f484ac7bf95faa0f636b
Content MD5sum
179b2299cdcdb86ae540a11f160190e9
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp15_atac_10x1_NGS2_atac_seqspec.yaml.gz
Checkfiles Version
v16
Attribution
Ansuman Satpathy, Stanford
(
HG011972
—
Jesse Engreitz
)
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2599QHOU
fastq
reads
1
Read 2
Illumina NovaSeq X
22NHMTLT3
3
12 GB
Ansuman Satpathy, Stanford
validated
IGVFFI3057TBTI
fastq
reads
1
Illumina NovaSeq X
22NHMTLT3
3
2.8 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4855ASAI
fastq
reads
1
Read 1
Illumina NovaSeq X
22NHMTLT3
3
12 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8321JOIP
fastq
reads
1
Barcode index
Illumina NovaSeq X
22NHMTLT3
3
6.6 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2174QALS
MultiplexedSample
GM25256 (WTC-11)
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days; ... and 10 more samples